Evidence map›Paper›PMID 19270113›Full record

ArticleApplied and environmental microbiology2009

Establishment of oxidative D-xylose metabolism in Pseudomonas putida S12.

Jean-Paul Meijnen, Johannes H de Winde, Harald J Ruijssenaars

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Article
  3. Engineering mixed sugar metabolic channels inSynthetic and systems biotechnology · 2026
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  5. Review
  6. Metabolic bottlenecks ofMetabolic engineering communications · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Comparison of Three Xylose Pathways inFrontiers in bioengineering and biotechnology · 2019
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Jean-Paul MeijnenDepartment of Biotechnology, Delft University of Technology, Julianalaan 67, 2628 BC Delft, The Netherlands. J.P.Meijnen@tudelft.nl
Johannes H de Winde
Harald J Ruijssenaars
Cancer Genomics Centre · NLDelft University of Technology · NLFood & Nutrition · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The oxidative D-xylose catabolic pathway of Caulobacter crescentus, encoded by the xylXABCD operon, was expressed in the gram-negative bacterium Pseudomonas putida S12. This engineered transformant strain was able to grow on D-xylose as a sole carbon source with a biomass yield of 53% (based on g [dry weight] g D-xylose(-1)) and a maximum growth rate of 0.21 h(-1). Remarkably, most of the genes of the xylXABCD operon appeared to be dispensable for growth on D-xylose. Only the xylD gene, encoding D-xylonate dehydratase, proved to be essential for establishing an oxidative D-xylose catabolic pathway in P. putida S12. The growth performance on D-xylose was, however, greatly improved by coexpression of xylXA, encoding 2-keto-3-deoxy-D-xylonate dehydratase and alpha-ketoglutaric semialdehyde dehydrogenase, respectively. The endogenous periplasmic glucose dehydrogenase (Gcd) of P. putida S12 was found to play a key role in efficient oxidative D-xylose utilization. Gcd activity not only contributes to D-xylose oxidation but also prevents the intracellular accumulation of toxic catabolic intermediates which delays or even eliminates growth on D-xylose.

Indexed as

Aldehyde OxidoreductasesBacterial ProteinsCaulobacter crescentusGene DeletionGenetic EngineeringGlucose 1-DehydrogenaseHydro-LyasesMetabolic Networks and PathwaysOperonPseudomonas putidaXylose2,5-dioxovalerate dehydrogenaseAldehyde OxidoreductasesBacterial ProteinsD-xylo-aldonate dehydrataseGlucose 1-DehydrogenaseHydro-LyasesXylose

Identifiers

PMID19270113
PMCPMC2681702
OpenAlexW2101306098

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.