Evidence map›Paper›PMID 19267341›Full record

ArticleCell motility and the cytoskeleton2009

GEF1 is a ciliary Sec7 GEF of Tetrahymena thermophila.

Aaron J Bell, Charles Guerra, Vincent Phung, Saraswathy Nair, Raviraja Seetharam, Peter Satir

Open access · greenAbstract read
In one paragraph

Article in Cell motility and the cytoskeleton, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 89% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Aaron J BellDepartment of Anatomy and Structural Biology, Albert Einstein College of Medicine, Bronx, New York, USA. abell@aecom.yu.edu
Charles Guerra
Vincent Phung
Saraswathy Nair
Raviraja Seetharam
Peter Satir
Albert Einstein College of Medicine · USYeshiva University · USBrownsville Public Library · USMontefiore Medical Center · US

Funding

Special Animal CoreP30DK041296 · NIDDK · YESHIVA UNIVERSITY · PI WOLKOFF, ALLAN W · 1989 to 2018
$22.9M
Project4: INTERACTION OF AUTOPHAGIC AND HETEROPHAGIC PATHWAYS IN LIVERP01DK041918 · NIDDK · YESHIVA UNIVERSITY · PI WOLKOFF, ALLAN W · 1990 to 2012
$19.1M
ETHANOL MEDIATED CILIA MOTILITY DYSFUNCTIONR01AA008769 · NIAAA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SISSON, JOSEPH H · 1996 to 2016
$4.4M
Ethanol-mediated cilia motility dysfunctionR37AA008769 · NIAAA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SISSON, JOSEPH H · 2006 to 2010
$2.4M
CYTOSKELETAL ORGANIZATION AND MALIGNANT TRANSFORMATIONT32CA009475 · NCI · YESHIVA UNIVERSITY · PI SATIR, PETER · 1985 to 2002
$621k
ACETALDEHYDE-MEDIATED BRONCHIAL CILIA DYSFUNCTIONR29AA008769 · NIAAA · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SISSON, JOSEPH H · 1991 to 1995
–
NCI NIH HHS T32 CA009475NIAAA NIH HHS AA008769NIAAA NIH HHS R01 AA008769NIAAA NIH HHS R29 AA008769NIAAA NIH HHS R37 AA008769NIDDK NIH HHS DK 41296NIDDK NIH HHS DK 41918NIDDK NIH HHS P30 DK041296
6 · The paper itself

Abstract

Ciliary guanine nucleotide exchange factors (GEFs) potentially activate G proteins in intraflagellar transport (IFT) cargo release. Several classes of GEFs have been localized to cilia or basal bodies and shown to be functionally important in the prevention of ciliopathies, but ciliary Arl-type Sec 7 related GEFs have not been well characterized. Nair et al. [ 1999] identified a Paramecium ciliary Sec7 GEF, PSec7. In Tetrahymena, Gef1p (GEF1), tentatively identified by PSec7 antibody, possesses ciliary and nuclear targeting sequences and like PSec7 localizes to cilia and macronuclei. Upregulation of GEF1 RNA followed deciliation and subsequent ciliary regrowth. Corresponding to similar Psec7 domains, GEF1domains contain IQ-like motifs and putative PH domains, in addition to GBF/BIG canonical motifs. Genomic analysis identified two additional Tetrahymena GBF/BIG Sec7 family GEFs (GEF2, GEF3), which do not possess ciliary targeting sequences. GEF1 and GEF2 were HA modified to determine cellular localization. Cells transformed to produce appropriately truncated GEF1-HA showed localization to somatic and oral cilia, but not to macronuclei. Subtle defects in ciliary stability and function were detected. GEF2-HA localized near basal bodies but not to cilia. These results indicate that GEF1 is the resident Tetrahymena ciliary protein orthologous to PSec7. Cell Motil. Cytoskeleton 2009. (c) 2009 Wiley-Liss, Inc.

Indexed as

AnimalsCiliaFluorescent Antibody TechniqueGenome, ProtozoanGuanine Nucleotide Exchange FactorsMacronucleusMicroscopy, ImmunoelectronProtein Structure, TertiaryProtozoan ProteinsReverse Transcriptase Polymerase Chain ReactionSequence Analysis, DNATetrahymena thermophilaGuanine Nucleotide Exchange FactorsProtozoan Proteins

Identifiers

PMID19267341
PMCPMC2767173
OpenAlexW1989070844

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.