Evidence map›Paper›PMID 19266279›Full record

ArticleBreast cancer research and treatment2010

Proliferative genes dominate malignancy-risk gene signature in histologically-normal breast tissue.

Dung-Tsa Chen, Aejaz Nasir, Aedin Culhane, Chinnambally Venkataramu, William Fulp, Renee Rubio, Tao Wang, Deepak Agrawal, Susan M McCarthy, Mike Gruidl and 5 more

Abstract read
In one paragraph

Article in Breast cancer research and treatment, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 95 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
95citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

95 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  8. Histamine H4 Receptor Expression in Triple-negative Breast Cancer: An Exploratory Study.The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society · 2022
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35 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Dung-Tsa ChenBiostatistics Department, Moffitt Cancer Center & Research Institute, Tampa, FL, 33612, USA.
Aejaz Nasir
Aedin Culhane
Chinnambally Venkataramu
William Fulp
Renee Rubio
Tao Wang
Deepak Agrawal
Susan M McCarthy
Mike Gruidl
Gregory Bloom
Tove Anderson
Joe White
John Quackenbush
Timothy Yeatman

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Screening for Breast Cancer Using Molecular SignaturesR01CA098522 · NCI · H. LEE MOFFITT CANCER CTR &RES INST · PI YEATMAN, TIMOTHY J · 2003 to 2007
$2.8M
Chip-Based Diagnosis of Problematic Liver TumorsR01CA112215 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI YEATMAN, TIMOTHY J · 2006 to 2010
$2.3M
NCI NIH HHS P30 CA076292NCI NIH HHS R01 CA 098522NCI NIH HHS R01 CA098522NCI NIH HHS R01 CA112215NCI NIH HHS R01CA112215
6 · The paper itself

Abstract

Historical data have indicated the potential for the histologically-normal breast to harbor pre-malignant changes at the molecular level. We postulated that a histologically-normal tissue with "tumor-like" gene expression pattern might harbor substantial risk for future cancer development. Genes associated with these high-risk tissues were considered to be "malignancy-risk genes". From a total of 90 breast cancer patients, we collected a set of 143 histologically-normal breast tissues derived from patients harboring breast cancer who underwent curative mastectomy, as well as a set of 42 invasive ductal carcinomas (IDC) of various histologic grades. All samples were assessed for global gene expression differences using microarray analysis. For the purpose of this study we defined normal breast tissue to include histologically normal and benign lesions. Here we report the discovery of a "malignancy-risk" gene signature that may portend risk of breast cancer development in benign, but molecularly-abnormal, breast tissue. Pathway analysis showed that the malignancy-risk signature had a dramatic enrichment for genes with proliferative function, but appears to be independent of ER, PR, and HER2 status. The signature was validated by RT-PCR, with a high correlation (Pearson correlation = 0.95 with P < 0.0001) with microarray data. These results suggest a predictive role for the malignancy-risk signature in normal breast tissue. Proliferative biology dominates the earliest stages of tumor development.

Indexed as

Cell ProliferationGene Expression Regulation, NeoplasticGenetic TestingOligonucleotide Array Sequence AnalysisBiomarkers, TumorBreast NeoplasmsCarcinoma, Ductal, BreastCase-Control StudiesErb-b2 Receptor Tyrosine KinasesFemaleGene Expression ProfilingGene Regulatory NetworksGenetic Predisposition to DiseaseHumansMastectomyPrecancerous ConditionsBiomarkers, TumorERBB2 protein, humanErb-b2 Receptor Tyrosine KinasesReceptors, EstrogenReceptors, Progesterone

Identifiers

PMID19266279
PMCPMC2796276

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.