Evidence map›Paper›PMID 19265565›Full record

ArticleParasitology2009

Transcriptome analysis of Schistosoma mansoni larval development using serial analysis of gene expression (SAGE).

A S Taft, J J Vermeire, J Bernier, S R Birkeland, M J Cipriano, A R Papa, A G McArthur, T P Yoshino

Abstract read
In one paragraph

Article in Parasitology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Immune Evasion Strategies of Schistosomes.Frontiers in immunology · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

A S TaftDepartment of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53726, USA.
J J Vermeire
J Bernier
S R Birkeland
M J Cipriano
A R Papa
A G McArthur
T P Yoshino

Funding

Functional genomics of molluscan schistosome developmentR01AI061436 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI YOSHINO, TIMOTHY P. · 2005 to 2009
$1.7M
TICK SYSTEMATICS ON A GLOBAL BASISR01AI030026 · NIAID · GEORGIA SOUTHERN UNIVERSITY · PI KEIRANS, JAMES E · 1990 to 1994
–
NIAID NIH HHS AI30026NIAID NIH HHS N01 AI030026NIAID NIH HHS R01 AI061436NIAID NIH HHS R01AI061436-03
6 · The paper itself

Abstract

summaryInfection of the snail, Biomphalaria glabrata, by the free-swimming miracidial stage of the human blood fluke, Schistosoma mansoni, and its subsequent development to the parasitic sporocyst stage is critical to establishment of viable infections and continued human transmission. We performed a genome-wide expression analysis of the S. mansoni miracidia and developing sporocyst using Long Serial Analysis of Gene Expression (LongSAGE). Five cDNA libraries were constructed from miracidia and in vitro cultured 6- and 20-day-old sporocysts maintained in sporocyst medium (SM) or in SM conditioned by previous cultivation with cells of the B. glabrata embryonic (Bge) cell line. We generated 21 440 SAGE tags and mapped 13 381 to the S. mansoni gene predictions (v4.0e) either by estimating theoretical 3' UTR lengths or using existing 3' EST sequence data. Overall, 432 transcripts were found to be differentially expressed amongst all 5 libraries. In total, 172 tags were differentially expressed between miracidia and 6-day conditioned sporocysts and 152 were differentially expressed between miracidia and 6-day unconditioned sporocysts. In addition, 53 and 45 tags, respectively, were differentially expressed in 6-day and 20-day cultured sporocysts, due to the effects of exposure to Bge cell-conditioned medium.

Indexed as

Gene Expression ProfilingGene Expression Regulation, DevelopmentalAnimalsBase SequenceBiomphalariaDNA, HelminthGene LibraryHelminth ProteinsHost-Parasite InteractionsLarvaMolecular Sequence DataOocystsSchistosoma mansoniSequence Analysis, DNADNA, HelminthHelminth Proteins

Identifiers

PMID19265565
PMCPMC4616010

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.