Evidence map›Paper›PMID 19264959›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Multiple ERK substrates execute single biological processes in Caenorhabditis elegans germ-line development.

Swathi Arur, Mitsue Ohmachi, Sudhir Nayak, Matthew Hayes, Alejandro Miranda, Amanda Hay, Andy Golden, Tim Schedl

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 93 papers.

0numbers the graph read from it
0cells of the map it votes in
93citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

93 citing papers in PubMed, 125 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. A suppressor screenbioRxiv : the preprint server for biology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Regulation of oocyte maturation: Role of conserved ERK signaling.Molecular reproduction and development · 2022
    Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Reevaluation of the role of LIP-1 as an ERK/MPK-1 dual specificity phosphatase in theProceedings of the National Academy of Sciences of the United States of America · 2022
    Article

33 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Swathi ArurDepartment of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Mitsue Ohmachi
Sudhir Nayak
Matthew Hayes
Alejandro Miranda
Amanda Hay
Andy Golden
Tim Schedl
Washington University in St. Louis · USCollege of New Jersey · US

Funding

Stem cell proliferation / meiosis decision in C. elegansR01GM063310 · NIGMS · WASHINGTON UNIVERSITY · PI SCHEDL, TIM · 2001 to 2008
$3.2M
The role of VRK-1 during the meiotic divisions of C. elegans embryosZIADK024958 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI GOLDEN, ANDY · 2009 to 2009
$359k
Howard Hughes Medical InstituteIntramural NIH HHSNIGMS NIH HHS GM63310NIGMS NIH HHS R01 GM063310
6 · The paper itself

Abstract

RAS-extracellular signal regulated kinase (ERK) signaling governs multiple aspects of cell fate specification, cellular transitions, and growth by regulating downstream substrates through phosphorylation. Understanding how perturbations to the ERK signaling pathway lead to developmental disorders and cancer hinges critically on identification of the substrates. Yet, only a limited number of substrates have been identified that function in vivo to execute ERK-regulated processes. The Caenorhabditis elegans germ line utilizes the well-conserved RAS-ERK signaling pathway in multiple different contexts. Here, we present an integrated functional genomic approach that identified 30 ERK substrates, each of which functions to regulate one or more of seven distinct biological processes during C. elegans germ-line development. Our results provide evidence for three themes that underlie the robustness and specificity of biological outcomes controlled by ERK signaling in C. elegans that are likely relevant to ERK signaling in other organisms: (i) multiple diverse ERK substrates function to control each individual biological process; (ii) different combinations of substrates function to control distinct biological processes; and (iii) regulatory feedback loops between ERK and its substrates help reinforce or attenuate ERK activation. Substrates identified here have conserved orthologs in humans, suggesting that insights from these studies will contribute to our understanding of human diseases involving deregulated ERK activity.

Indexed as

Amino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsComputational BiologyEnzyme ActivationExtracellular Signal-Regulated MAP KinasesFeedback, PhysiologicalGerm CellsGlycogen Synthase Kinase 3MammalsMAP Kinase Signaling SystemMitogen-Activated Protein Kinase 1Molecular Sequence DataPhosphorylationSubstrate SpecificityCaenorhabditis elegans ProteinsExtracellular Signal-Regulated MAP KinasesGlycogen Synthase Kinase 3Mitogen-Activated Protein Kinase 1mpk-1 protein, C elegans

Identifiers

PMID19264959
PMCPMC2660749
OpenAlexW2058334613

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.