Evidence map›Paper›PMID 19258476›Full record

ArticleCancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology2009

CpG island tumor suppressor promoter methylation in non-BRCA-associated early mammary carcinogenesis.

Shauna N Vasilatos, Gloria Broadwater, William T Barry, Joseph C Baker, Siya Lem, Eric C Dietze, Gregory R Bean, Andrew D Bryson, Patrick G Pilie, Vanessa Goldenberg and 12 more

Open access · greenAbstract read
In one paragraph

Article in Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 51 citations in OpenAlex.

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  10. Hypoxia and DNA repair.The Yale journal of biology and medicine · 2013
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  15. Protein microarray analysis of mammary epithelial cells from obese and nonobese women at high risk for breast cancer: feasibility data.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2011
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 5 institutions in 2 countries.

Shauna N VasilatosDepartment of Medicine, Duke University Medical Center, Box 2628, Durham, NC 27710, USA.
Gloria Broadwater
William T Barry
Joseph C Baker
Siya Lem
Eric C Dietze
Gregory R Bean
Andrew D Bryson
Patrick G Pilie
Vanessa Goldenberg
David Skaar
Carolyn Paisie
Alejandro Torres-Hernandez
Tracey L Grant
Lee G Wilke
Catherine Ibarra-Drendall
Julie H Ostrander
Nicholas C D'Amato
Carola Zalles
Randy Jirtle
Valerie M Weaver
Victoria L Seewaldt
Immunovaccine (Canada) · CADuke Medical Center · USDuke University · USUniversity of California, San Francisco · USYale Cancer Center · US

Funding

Women's Cancer Research ProgramP30CA014236 · NCI · DUKE UNIVERSITY · PI DONNA NIEDZWIECKI · 1985 to 2026
$174.8M
SPORE IN BREAST CANCERP50CA068438 · NCI · DUKE UNIVERSITY · PI LYERLY, HERBERT KIM · 1995 to 2007
$14.3M
Extracellular Matrix Mediated Apoptosis in p53 (-) HMECsR01CA088799 · NCI · DUKE UNIVERSITY · PI SEEWALDT, VICTORIA L. · 2001 to 2010
$2.7M
KCNK9 Imprinting in Breast Cancer Progression and MetastasisR01CA155664 · NCI · DUKE UNIVERSITY · PI SEEWALDT, VICTORIA L. · 2011 to 2015
$1.8M
p53 loss in HMECs: a model of breast cancer preventionR01CA098441 · NCI · DUKE UNIVERSITY · PI SEEWALDT, VICTORIA L. · 2003 to 2007
$1.5M
Molecular markers of breast cancer risk and preventionR01CA114068 · NCI · DUKE UNIVERSITY · PI SEEWALDT, VICTORIA L. · 2006 to 2010
$1.3M
NCI NIH HHS 2P30CA14236-26NCI NIH HHS CA68438-AV13NCI NIH HHS P30 CA014236NCI NIH HHS P50 CA068438NCI NIH HHS R01 CA088799NCI NIH HHS R01 CA098441NCI NIH HHS R01 CA114068NCI NIH HHS R01CA114068NCI NIH HHS R01 CA155664NCI NIH HHS R01CA88799NCI NIH HHS R01CA98441
6 · The paper itself

Abstract

backgroundOnly 5% of all breast cancers are the result of BRCA1/2 mutations. Methylation silencing of tumor suppressor genes is well described in sporadic breast cancer; however, its role in familial breast cancer is not known.

methodsCpG island promoter methylation was tested in the initial random periareolar fine-needle aspiration sample from 109 asymptomatic women at high risk for breast cancer. Promoter methylation targets included RARB (M3 and M4), ESR1, INK4a/ARF, BRCA1, PRA, PRB, RASSF1A, HIN-1, and CRBP1.

resultsAlthough the overall frequency of CpG island promoter methylation events increased with age (P<0.0001), no specific methylation event was associated with age. In contrast, CpG island methylation of RARB M4 (P=0.051), INK4a/ARF (P=0.042), HIN-1 (P=0.044), and PRA (P=0.032), as well as the overall frequency of methylation events (P=0.004), was associated with abnormal Masood cytology. The association between promoter methylation and familial breast cancer was tested in 40 unaffected premenopausal women in our cohort who underwent BRCA1/2 mutation testing. Women with BRCA1/2 mutations had a low frequency of CpG island promoter methylation (15 of 15 women had <or=4 methylation events), whereas women without a mutation showed a high frequency of promoter methylation events (24 of 25 women had 5-8 methylation events; P<0.0001). Of women with a BRCA1/2 mutation, none showed methylation of HIN-1 and only 1 of 15 women showed CpG island methylation of RARB M4, INK4a/ARF, or PRB promoters.

conclusionsThis is the first evidence of CpG island methylation of tumor suppressor gene promoters in non-BRCA1/2 familial breast cancer.

Indexed as

Biopsy, Fine-NeedleBreast NeoplasmsChi-Square DistributionCpG IslandsCyclin-Dependent Kinase Inhibitor p16CytokinesDNA MethylationFemaleGenes, BRCA1Genes, BRCA2Genes, Tumor SuppressorHumansMutationPolymerase Chain ReactionPremenopausePromoter Regions, GeneticCyclin-Dependent Kinase Inhibitor p16Cytokinesprogesterone receptor BReceptors, ProgesteroneReceptors, Retinoic Acidretinoic acid receptor betaSCGB3A1 protein, humanTumor Suppressor Proteins

Identifiers

PMID19258476
PMCPMC2667866
OpenAlexW2100385616

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.