Evidence map›Paper›PMID 19255093›Full record

ArticleNucleic acids research2009

A novel zinc-binding fold in the helicase interaction domain of the Bacillus subtilis DnaI helicase loader.

Karin V Loscha, Kristaps Jaudzems, Charikleia Ioannou, Xun-Cheng Su, Flynn R Hill, Gottfried Otting, Nicholas E Dixon, Edvards Liepinsh

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 19 citations in OpenAlex.

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  11. Mechanisms for initiating cellular DNA replication.Annual review of biochemistry · 2013
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Karin V LoschaResearch School of Chemistry, Australian National University, Canberra, Australia.
Kristaps Jaudzems
Charikleia Ioannou
Xun-Cheng Su
Flynn R Hill
Gottfried Otting
Nicholas E Dixon
Edvards Liepinsh
Australian National University · AULatvijas Organiskās Sintēzes Institūts · LVUniversity of Wollongong · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The helicase loader protein DnaI (the Bacillus subtilis homologue of Escherichia coli DnaC) is required to load the hexameric helicase DnaC (the B. subtilis homologue of E. coli DnaB) onto DNA at the start of replication. While the C-terminal domain of DnaI belongs to the structurally well-characterized AAA+ family of ATPases, the structure of the N-terminal domain, DnaI-N, has no homology to a known structure. Three-dimensional structure determination by nuclear magnetic resonance (NMR) spectroscopy shows that DnaI presents a novel fold containing a structurally important zinc ion. Surface plasmon resonance experiments indicate that DnaI-N is largely responsible for binding of DnaI to the hexameric helicase from B. stearothermophilus, which is a close homologue of the corresponding much less stable B. subtilis helicase.

Indexed as

Amino Acid SequenceBacterial ProteinsDnaB HelicasesModels, MolecularMolecular Sequence DataNuclear Magnetic Resonance, BiomolecularProtein FoldingProtein Interaction Domains and MotifsProtein Structure, TertiarySequence Homology, Amino AcidSurface Plasmon ResonanceZincBacterial ProteinsDnaB HelicasesDnaI protein, Bacillus subtilisZinc

Identifiers

PMID19255093
PMCPMC2673437
OpenAlexW2103719022

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.