Evidence map›Paper›PMID 19252082›Full record

ArticleThe Plant cell2009

The RPN5 subunit of the 26s proteasome is essential for gametogenesis, sporophyte development, and complex assembly in Arabidopsis.

Adam J Book, Jan Smalle, Kwang-Hee Lee, Peizhen Yang, Joseph M Walker, Sarah Casper, James H Holmes, Laura A Russo, Zachri W Buzzinotti, Pablo D Jenik and 1 more

Open access · greenAbstract read
In one paragraph

Article in The Plant cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 81 citations in OpenAlex.

  1. Article
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  9. Review
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  11. Advances on Plant Ubiquitylome-From Mechanism to Application.International journal of molecular sciences · 2020
    Review
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  13. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Adam J BookDepartment of Genetics, University of Wisconsin, Madison, Wisconsin 53706, USA.
Jan Smalle
Kwang-Hee Lee
Peizhen Yang
Joseph M Walker
Sarah Casper
James H Holmes
Laura A Russo
Zachri W Buzzinotti
Pablo D Jenik
Richard D Vierstra
University of Wisconsin–Madison · USFranklin & Marshall College · USOberlin College · US

Funding

Compositional Analysis of the Arabidopsis 26S ProteasomeF31NS054563 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI BOOK, ADAM J · 2006 to 2009
$136k
NINDS NIH HHS 5F31NS054563NINDS NIH HHS F31 NS054563
6 · The paper itself

Abstract

The 26S proteasome is an essential multicatalytic protease complex that degrades a wide range of intracellular proteins, especially those modified with ubiquitin. Arabidopsis thaliana and other plants use pairs of genes to encode most of the core subunits, with both of the isoforms often incorporated into the mature complex. Here, we show that the gene pair encoding the regulatory particle non-ATPase subunit (RPN5) has a unique role in proteasome function and Arabidopsis development. Homozygous rpn5a rpn5b mutants could not be generated due to a defect in male gametogenesis. While single rpn5b mutants appear wild-type, single rpn5a mutants display a host of morphogenic defects, including abnormal embryogenesis, partially deetiolated development in the dark, a severely dwarfed phenotype when grown in the light, and infertility. Proteasome complexes missing RPN5a are less stable in vitro, suggesting that some of the rpn5a defects are caused by altered complex integrity. The rpn5a phenotype could be rescued by expression of either RPN5a or RPN5b, indicating functional redundancy. However, abnormal phenotypes generated by overexpression implied that paralog-specific functions also exist. Collectively, the data point to a specific role for RPN5 in the plant 26S proteasome and suggest that its two paralogous genes in Arabidopsis have both redundant and unique roles in development.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCarrier ProteinsEmbryonic DevelopmentIntracellular Signaling Peptides and ProteinsMolecular Sequence DataPhenotypePollenProteasome Endopeptidase ComplexProtein SubunitsSeedsSequence AlignmentArabidopsis ProteinsATP dependent 26S proteaseCarrier ProteinsIntracellular Signaling Peptides and ProteinsProteasome Endopeptidase ComplexProtein SubunitsRPN5 protein, Arabidopsis

Identifiers

PMID19252082
PMCPMC2660617
OpenAlexW2124063415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.