Evidence map›Paper›PMID 19251851›Full record

ArticleJournal of bacteriology2009

CodY in Staphylococcus aureus: a regulatory link between metabolism and virulence gene expression.

Konstanze Pohl, Patrice Francois, Ludwig Stenz, Frank Schlink, Tobias Geiger, Silvia Herbert, Christiane Goerke, Jacques Schrenzel, Christiane Wolz

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 149 papers.

0numbers the graph read from it
0cells of the map it votes in
149citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

149 citing papers in PubMed, 213 citations in OpenAlex.

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89 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Konstanze PohlInstitute of Medical Microbiology and Hygiene, University of Tübingen, [corrected] Tübingen, Germany.
Patrice Francois
Ludwig Stenz
Frank Schlink
Tobias Geiger
Silvia Herbert
Christiane Goerke
Jacques Schrenzel
Christiane Wolz
Institute of Medical Microbiology and Hygiene · DEUniversity of Geneva · CHUniversity of Tübingen · DE

Funding

NIAID NIH HHS HHSN272200700055CPHS HHS HHSN2722007 00055C
6 · The paper itself

Abstract

The repressor CodY is reported to inhibit metabolic genes mainly involved in nitrogen metabolism. We analyzed codY mutants from three unrelated Staphylococcus aureus strains (Newman, UAMS-1, and RN1HG). The mutants grew more slowly than their parent strains in a chemically defined medium. However, only codY mutants were able to grow in medium lacking threonine. An excess of isoleucine resulted in growth inhibition in the wild type but not in the codY mutants, indicating that isoleucine plays a role in CodY-dependent repression. Prototypic CodY-repressed genes including the virulence regulator agr are repressed after up-shift with isoleucine. The CodY-dependent repression of agr is consistent with the concomitant influence of CodY on typical agr-regulated genes such as cap, spa, fnbA, and coa. However, some of these virulence genes (e.g., cap, fnbA, and spa) were also regulated by CodY in an agr-negative background. Microarray analysis revealed that the large majority of CodY-repressed genes were involved in amino acid metabolism; CodY-activated genes were mainly involved in nucleotide metabolism or virulence. In summary, CodY in S. aureus not only acts as a repressor for genes involved in nitrogen metabolism but also contributes to virulence gene regulation by supporting as well as substituting for agr function.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsGene Expression ProfilingIsoleucineMutationOligonucleotide Array Sequence AnalysisRepressor ProteinsStaphylococcus aureusThreonineTrans-ActivatorsVirulenceVirulence FactorsAgr protein, Staphylococcus aureusBacterial ProteinsCodY protein, Staphylococcus aureusIsoleucineRepressor ProteinsThreonineTrans-ActivatorsVirulence Factors

Identifiers

PMID19251851
PMCPMC2681790
OpenAlexW2147674484

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.