Evidence map›Paper›PMID 19250909›Full record

ArticleMolecular cell2009

E2-RING expansion of the NEDD8 cascade confers specificity to cullin modification.

Danny T Huang, Olivier Ayrault, Harold W Hunt, Asad M Taherbhoy, David M Duda, Daniel C Scott, Laura A Borg, Geoffrey Neale, Peter J Murray, Martine F Roussel and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 177 papers.

0numbers the graph read from it
0cells of the map it votes in
177citing papers in PubMed
8.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

177 citing papers in PubMed, 271 citations in OpenAlex.

  1. Review
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  5. UBE2M deficiency in alveolar macrophages promotes emphysema through HIF-2α/MMP12 axis.Chinese medical journal pulmonary and critical care medicine · 2026
    Article
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  7. Review
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  9. Review
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  11. Article
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  16. Neddylation modification stabilizes LC3B by antagonizing its ubiquitin-mediated degradation and promoting autophagy in skin.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  17. Review
  18. Article
  19. Article
  20. Article

117 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Danny T HuangDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Olivier Ayrault
Harold W Hunt
Asad M Taherbhoy
David M Duda
Daniel C Scott
Laura A Borg
Geoffrey Neale
Peter J Murray
Martine F Roussel
Brenda A Schulman
St. Jude Children's Research Hospital · USHoward Hughes Medical Institute · USUniversity of Tennessee Health Science Center · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SUZANNE J. BAKER · 1985 to 2026
$166.9M
Y-FAMILY POLYMERASES AND CO-FACTORS IN TRANSLESION REPLICATIONP41RR015301 · NCRR · CORNELL UNIVERSITY ITHACA · PI RAO, ANJANA · 2001 to 2011
$28.2M
PAX3/FKHR IN ALVEOLAR RHABDOMYOSARCOMAP01CA071907 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI DOWNING, JAMES R · 1996 to 2005
$10.8M
Ubiquitin-like Protein Transfer CascadesR01GM069530 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHULMAN, BRENDA A · 2003 to 2013
$3.4M
Structures/mechanisms in a noncanonical ubiquitin-like protein transfer cascadeR01GM077053 · NIGMS · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SCHULMAN, BRENDA A · 2006 to 2014
$1.8M
Howard Hughes Medical InstituteNCI NIH HHS 5P01CA0719075NCI NIH HHS P01 CA071907NCI NIH HHS P30 CA021765NCI NIH HHS P30CA021765NCRR NIH HHS P41 RR015301NCRR NIH HHS RR-15301NIGMS NIH HHS R01 GM069530NIGMS NIH HHS R01GM069530NIGMS NIH HHS R01 GM077053NIGMS NIH HHS R01GM077053
6 · The paper itself

Abstract

Ubiquitin and ubiquitin-like proteins (UBLs) are directed to targets by cascades of E1, E2, and E3 enzymes. The largest ubiquitin E3 subclass consists of cullin-RING ligases (CRLs), which contain one each of several cullins (CUL1, -2, -3, -4, or -5) and RING proteins (RBX1 or -2). CRLs are activated by ligation of the UBL NEDD8 to a conserved cullin lysine. How is cullin NEDD8ylation specificity established? Here we report that, like UBE2M (also known as UBC12), the previously uncharacterized E2 UBE2F is a NEDD8-conjugating enzyme in vitro and in vivo. Biochemical and structural analyses indicate how plasticity of hydrophobic E1-E2 interactions and E1 conformational flexibility allow one E1 to charge multiple E2s. The E2s have distinct functions, with UBE2M/RBX1 and UBE2F/RBX2 displaying different target cullin specificities. Together, these studies reveal the molecular basis for and functional importance of hierarchical expansion of the NEDD8 conjugation system in establishing selective CRL activation.

Indexed as

Amino Acid SequenceAnimalsBinding SitesCells, CulturedCullin ProteinsMiceModels, MolecularMolecular Sequence DataNIH 3T3 CellsProtein ConformationProtein FoldingUbiquitin-Protein LigasesUbiquitinsCullin ProteinsUbiquitin-Protein LigasesUbiquitins

Identifiers

PMID19250909
PMCPMC2725360
OpenAlexW1982834717

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.