Evidence map›Paper›PMID 19250639›Full record

ArticleBiochemical and biophysical research communications2009

Non-AUG translational initiation of a short CAPC transcript generating protein isoform.

Suresh Anaganti, Johanna K Hansen, Duc Ha, Yoonsoo Hahn, Oleg Chertov, Ira Pastan, Tapan K Bera

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Suresh AnagantiLaboratory of Molecular Biology, Center for Cancer Research, National Cancer Institute, National Institutes of Health, 37 Convent Drive, Room 5110, Bethesda, MD 20892-4264, USA.
Johanna K Hansen
Duc Ha
Yoonsoo Hahn
Oleg Chertov
Ira Pastan
Tapan K Bera
National Cancer Institute · USNational Institutes of Health · USCenter for Cancer Research · USScience Applications International Corporation (United States) · US

Funding

Growth Regulation SectionZIABC010298 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PASTAN, IRA · 2009 to 2023
$5.0M
Growth Regulation SectionZ01BC010298 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI PASTAN, IRA · 1998 to 2008
$2.1M
Intramural NIH HHS Z01 BC010298NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

CAPC (also known as LRRC26) is a new gene with restricted expression in normal tissues, and with expression in many cancers and cancer cell lines. We have identified and characterized a short-transcript of CAPC (S-CAPC). The nucleotide sequence analysis of CAPC mRNA showed that the transcription for S-CAPC starts at position +610 on the L-CAPC transcript. Interestingly, no translation initiation codon 'AUG' is present in this transcript. To determine if a non-AUG start site is utilized, the S-CAPC sequence was cloned into an expression vector with C-terminal myc and histidine tags, and transfected into 293T cells. Western blot and MALDI-TOF MS analysis on purified S-CAPC gave two distinct peaks at approximately 7.5 kDa. N-terminal amino acid sequencing of the purified 7.5 kDa protein product indicated that translation starts at the codon for cysteine on the S

Indexed as

Peptide Chain Initiation, TranslationalCell Line, TumorCodon, InitiatorHumansNeoplasm ProteinsNeoplasmsProtein IsoformsRNA, MessengerSequence Analysis, ProteinSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTranscription, GeneticCodon, InitiatorLRRC26 protein, humanNeoplasm ProteinsProtein IsoformsRNA, Messenger

Identifiers

PMID19250639
PMCPMC2664252
OpenAlexW2024111028

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.