Evidence map›Paper›PMID 19250638›Full record

ArticleBiochemical and biophysical research communications2009

Sphingosine 1-phosphate lyase enzyme assay using a BODIPY-labeled substrate.

Padmavathi Bandhuvula, Zaiguo Li, Robert Bittman, Julie D Saba

Open access · greenAbstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Methuosis Contributes to Jaspine-B-Induced Cell Death.International journal of molecular sciences · 2022
    Article
  3. Article
  4. Article
  5. Article
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  10. Sphingosine phosphate lyase regulates myogenic differentiation via S1P receptor-mediated effects on myogenic microRNA expression.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2014
    Article
  11. Article
  12. Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Padmavathi BandhuvulaCancer Biology Lab, Children's Hospital Oakland Research Institute, 5700 Martin Luther King Jr. Way, Oakland, CA 94609, USA.
Zaiguo Li
Robert Bittman
Julie D Saba
Oakland University · USQueens College, CUNY · US

Funding

SPHINGOSINE--REGULATION AND POTENTIAL ROLE IN CANCERR01CA077528 · NCI · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI SABA, JULIE D · 1998 to 2009
$2.8M
Sphingolipid Metabolism in Drosophila DevelopmentR01GM066954 · NIGMS · CHILDREN'S HOSPITAL &RES CTR AT OAKLAND · PI SABA, JULIE D · 2003 to 2013
$2.5M
Synthesis of Novel Bioactive Sphingolipids as a ResourceR24HL083187 · NHLBI · QUEENS COLLEGE · PI BITTMAN, ROBERT · 2006 to 2013
$2.5M
NCI NIH HHS CA-77528NCI NIH HHS R01 CA077528NHLBI NIH HHS HL-083187NHLBI NIH HHS R24 HL083187NIGMS NIH HHS GM-66954NIGMS NIH HHS R01 GM066954
6 · The paper itself

Abstract

Sphingosine 1-phosphate lyase (SPL) is responsible for the irreversible catabolism of sphingosine 1-phosphate, which signals through five membrane receptors to mediate cell stress responses, angiogenesis, and lymphocyte trafficking. The standard assay for SPL activity utilizes a radioactive dihydrosphingosine 1-phosphate substrate and is expensive and cumbersome. In this study, we describe an SPL assay that employs an omega-labeled BODIPY-sphingosine 1-phosphate substrate, allowing fluorescent product detection by HPLC and incorporating advantages of the BODIPY fluorophore. The major aldehyde product is confirmed by reaction with 2,4-dinitrophenylhydrazine. The SPL-catalyzed reaction is linear over a 30 min time period and yields a K(m) of 35 microM for BODIPY-sphingosine 1-phosphate.

Indexed as

Aldehyde-LyasesAnimalsBoron CompoundsCatalysisCell LineChromatography, High Pressure LiquidFluorescent DyesHumansLysophospholipidsMethodsMiceSphingosine4,4-difluoro-4-bora-3a,4a-diaza-s-indaceneAldehyde-LyasesBoron CompoundsFluorescent DyesLysophospholipidsSphingosinesphingosine 1-phosphatesphingosine 1-phosphate lyase (aldolase)

Identifiers

PMID19250638
PMCPMC2790368
OpenAlexW2127085274

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.