Evidence map›Paper›PMID 19249006›Full record

SynthesisAmerican journal of human genetics2009

Genome-wide association and follow-up replication studies identified ADAMTS18 and TGFBR3 as bone mass candidate genes in different ethnic groups.

Dong-Hai Xiong, Xiao-Gang Liu, Yan-Fang Guo, Li-Jun Tan, Liang Wang, Bao-Yong Sha, Zi-Hui Tang, Feng Pan, Tie-Lin Yang, Xiang-Ding Chen and 19 more

Open access · bronzeAbstract readMeta-Analysis
In one paragraph

Synthesis in American journal of human genetics, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 114 papers, 11 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
114citing papers in PubMed, 11 pooled it
15.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

114 citing papers in PubMed, 11 syntheses or guidelines pooled it, 203 citations in OpenAlex.

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  4. Association of 3q13.32 variants with hip trochanter and intertrochanter bone mineral density identified by a genome-wide association study.Osteoporosis international : a journal established as result of cooperation between the European Foundation for Osteoporosis and the National Osteoporosis Foundation of the USA · 2016
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  10. Meta-analysis of genome-wide studies identifies WNT16 and ESR1 SNPs associated with bone mineral density in premenopausal women.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2013
    Pooled it
  11. IL21R and PTH may underlie variation of femoral neck bone mineral density as revealed by a genome-wide association study.Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research · 2010
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54 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors at 8 institutions in 3 countries.

Dong-Hai XiongDepartments of Orthopedic Surgery and Basic Medical Sciences, University of Missouri-Kansas City, Kansas City, MO 64108, USA.
Xiao-Gang Liu
Yan-Fang Guo
Li-Jun Tan
Liang Wang
Bao-Yong Sha
Zi-Hui Tang
Feng Pan
Tie-Lin Yang
Xiang-Ding Chen
Shu-Feng Lei
Laura M Yerges
Xue-Zen Zhu
Victor W Wheeler
Alan L Patrick
ClareAnn H Bunker
Yan Guo
Han Yan
Yu-Fang Pei
Yin-Pin Zhang
Shawn Levy
Christopher J Papasian
Peng Xiao
Y Wang Lundberg
Robert R Recker
Yao-Zhong Liu
Yong-Jun Liu
Joseph M Zmuda
Hong-Wen Deng
Xi'an Jiaotong University · CNHunan Normal University · CNUniversity of Missouri–Kansas City · USCreighton University · USUniversity of Pittsburgh · USUniversity of Trinidad and Tobago · TTBoys Town National Research Hospital · USVanderbilt University · US

Funding

Epidemiology of Bone Loss in African MenR01AR049747 · NIAMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI ZMUDA, JOSEPH M. · 2003 to 2014
$5.9M
Proteome-wide Expression Study of Osteogenic CellsP50AR055081 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2007 to 2012
$5.0M
ROBUST AND POWERFUL TEST OF CANDIDATE GENES TO BONE MASSR01AR050496 · NIAMS · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2004 to 2013
$3.8M
Genomic search for bone mass QTLsR01AG026564 · NIA · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2007 to 2010
$2.3M
Proteomics Study of Peripheral Blood Monocytes on OsteroporsisR21AG027110 · NIA · UNIVERSITY OF MISSOURI KANSAS CITY · PI DENG, HONG-WEN · 2006 to 2007
$367k
NIAMS NIH HHS P50 AR055081NIAMS NIH HHS R01 AR049747NIAMS NIH HHS R01 AR050496NIAMS NIH HHS R01 AR050496-01NIA NIH HHS R01 AG026564NIA NIH HHS R21 AG027110
6 · The paper itself

Abstract

To identify and validate genes associated with bone mineral density (BMD), which is a prominent osteoporosis risk factor, we tested 379,319 SNPs in 1000 unrelated white U.S. subjects for associations with BMD. For replication, we genotyped the most significant SNPs in 593 white U.S. families (1972 subjects), a Chinese hip fracture (HF) sample (350 cases, 350 controls), a Chinese BMD sample (2955 subjects), and a Tobago cohort of African ancestry (908 males). Publicly available Framingham genome-wide association study (GWAS) data (2953 whites) were also used for in silico replication. The GWAS detected two BMD candidate genes, ADAMTS18 (ADAM metallopeptidase with thrombospondin type 1 motif, 18) and TGFBR3 (transforming growth factor, beta receptor III). Replication studies verified the significant findings by GWAS. We also detected significant associations with hip fracture for ADAMTS18 SNPs in the Chinese HF sample. Meta-analyses supported the significant associations of ADAMTS18 and TGFBR3 with BMD (p values: 2.56 x 10(-5) to 2.13 x 10(-8); total sample size: n = 5925 to 9828). Electrophoretic mobility shift assay suggested that the minor allele of one significant ADAMTS18 SNP might promote binding of the TEL2 factor, which may repress ADAMTS18 expression. The data from NCBI GEO expression profiles also showed that ADAMTS18 and TGFBR3 genes were differentially expressed in subjects with normal skeletal fracture versus subjects with nonunion skeletal fracture. Overall, the evidence supports that ADAMTS18 and TGFBR3 might underlie BMD determination in the major human ethnic groups.

Indexed as

Asian PeopleBlack PeopleWhite PeopleADAM ProteinsADAMTS ProteinsAdultAgedBone DensityDatabases, GeneticFemaleFollow-Up StudiesGenetic Predisposition to DiseaseGenome-Wide Association StudyHip FracturesHumansMaleADAM ProteinsADAMTS18 protein, humanADAMTS ProteinsbetaglycanProteoglycansReceptors, Transforming Growth Factor beta

Identifiers

PMID19249006
PMCPMC2667986
OpenAlexW2042727474

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.