Evidence map›Paper›PMID 19248763›Full record

ArticleBiochimica et biophysica acta2009

Alamethicin in lipid bilayers: combined use of X-ray scattering and MD simulations.

Jianjun Pan, D Peter Tieleman, John F Nagle, Norbert Kucerka, Stephanie Tristram-Nagle

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In one paragraph

Article in Biochimica et biophysica acta, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 102 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Jianjun PanBiological Physics Group, Physics Department, Carnegie Mellon University, 5000 Forbes Avenue, Pittsburgh, PA 15213, USA.
D Peter Tieleman
John F Nagle
Norbert Kucerka
Stephanie Tristram-Nagle
Carnegie Mellon University · USUniversity of Calgary · CA

Funding

STRUCTURE OF LIPID BILAYERSR01GM044976 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI NAGLE, JOHN F, TRISTRAM-NAGLE, STEPHANIE · 1990 to 2014
$3.1M
NIGMS NIH HHS DMR-0225180NIGMS NIH HHS GM 44976NIGMS NIH HHS R01 GM044976
6 · The paper itself

Abstract

We study fully hydrated bilayers of two di-monounsaturated phospholipids diC18:1PC (DOPC) and diC22:1PC with varying amounts of alamethicin (Alm). We combine the use of X-ray diffuse scattering and molecular dynamics simulations to determine the orientation of alamethicin in model lipids. Comparison of the experimental and simulated form factors shows that Alm helices are inserted transmembrane at high humidity and high concentrations, in agreement with earlier results. The X-ray scattering data and the MD simulations agree that membrane thickness changes very little up to 1/10 Alm/DOPC. In contrast, the X-ray data indicate that the thicker diC22:1PC membrane thins with added Alm, a total decrease in thickness of 4 A at 1/10 Alm/diC22:1PC. The different effect of Alm on the thickness changes of the two bilayers is consistent with Alm having a hydrophobic thickness close to the hydrophobic thickness of 27 A for DOPC; Alm is then mismatched with the 7 A thicker diC22:1PC bilayer. The X-ray data indicate that Alm decreases the bending modulus (K(C)) by a factor of approximately 2 in DOPC and a factor of approximately 10 in diC22:1PC membranes (P/L approximately 1/10). The van der Waals and fluctuational interactions between bilayers are also evaluated through determination of the anisotropic B compressibility modulus.

Indexed as

Lipid BilayersAlamethicinLipidsModels, MolecularPhosphatidylcholinesProtein ConformationScattering, RadiationSolventsX-Rays1,2-oleoylphosphatidylcholineAlamethicinLipid BilayersLipidsPhosphatidylcholinesSolvents

Identifiers

PMID19248763
PMCPMC2693350
OpenAlexW2128343298

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.