Evidence map›Paper›PMID 19244455›Full record

ArticlePlant physiology2009

Preferential up-regulation of G2/M phase-specific genes by overexpression of the hyperactive form of NtmybA2 lacking its negative regulation domain in tobacco BY-2 cells.

Kiichi Kato, Ivan Gális, Shiori Suzuki, Satoshi Araki, Taku Demura, Marie-Claire Criqui, Thomas Potuschak, Pascal Genschik, Hiroo Fukuda, Ken Matsuoka and 1 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  4. Comparative analysis of theFrontiers in plant science · 2023
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  7. Review
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  9. TheProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Evolution of the 3R-MYB Gene Family in Plants.Genome biology and evolution · 2017
    Article
  15. Article
  16. Article
  17. Article
  18. Regulating DNA replication in plants.Cold Spring Harbor perspectives in biology · 2012
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Kiichi KatoGraduate School of Bioagricultural Sciences, Nagoya University, Chikusa, Nagoya 464-8601, Japan.
Ivan Gális
Shiori Suzuki
Satoshi Araki
Taku Demura
Marie-Claire Criqui
Thomas Potuschak
Pascal Genschik
Hiroo Fukuda
Ken Matsuoka
Masaki Ito
Nagoya University · JPRIKEN Center for Sustainable Resource Science · JPIshihara Sangyo Kaisha (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many G2/M phase-specific genes in plants contain mitosis-specific activator (MSA) elements, which act as G2/M phase-specific enhancers and bind with R1R2R3-Myb transcription factors. Here, we examined the genome-wide effects of NtmybA2 overexpression, one of the R1R2R3-Myb transcription factors in tobacco (Nicotiana tabacum). We used a custom-made 16-K cDNA microarray for comparative transcriptome analysis of transgenic tobacco BY-2 cell lines that overexpress NtmybA2 or its truncated hyperactive form. The microarray was also used to determine the transcript profile during the cell cycle in synchronized cultures of BY-2 cells. Combined microarray data from transgenic lines and synchronized cells revealed that overexpression of the truncated hyperactive form of NtmybA2, but not its full-length form, preferentially up-regulated many G2/M phase-specific genes in BY-2 cells. We determined promoter sequences of several such up-regulated genes and showed that all contain MSA-like motifs in the proximal regions of their promoters. One of the up-regulated genes, NtE2C, encoding for cyclin-specific ubiquitin carrier proteins, contained a single functional MSA-like motif, which specifically controlled the expression of a reporter gene in the G2/M phase in BY-2 cells. Furthermore, a genomic footprint experiment showed that the MSA element in the NtE2C promoter interacted with nuclear proteins in vivo. Therefore, we propose that the transcription of many G2/M phase-specific genes in tobacco is positively regulated by NtmybA2, in most cases through direct binding to the MSA elements.

Indexed as

Gene Expression Regulation, PlantBase SequenceCell DivisionDNA FootprintingG2 PhaseGenes, PlantHomeostasisMolecular Sequence DataMutant ProteinsNicotianaOligonucleotide Array Sequence AnalysisPlant ProteinsProtein Structure, TertiaryProto-Oncogene Proteins c-mybRegulatory Sequences, Nucleic AcidRNA, MessengerMutant ProteinsPlant ProteinsProto-Oncogene Proteins c-mybRNA, Messenger

Identifiers

PMID19244455
PMCPMC2663760
OpenAlexW2010364636

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.