Evidence map›Paper›PMID 19242820›Full record

ArticleMolecular biology reports2010

Cloning the human SUMO1 promoter.

Angela Nanos-Webb, Adeline Deyrieux, Xue-lin Bian, Germán Rosas-Acosta, Van G Wilson

Abstract read
In one paragraph

Article in Molecular biology reports, 2010. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact, top 87% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. ERα promotesGland surgery · 2023
    Article
  2. Article
  3. Review
  4. Viral manipulation of the cellular sumoylation machinery.Cell communication and signaling : CCS · 2017
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 5 institutions in 1 country.

Angela Nanos-WebbGraduate School of Biomedical Sciences at Houston, The University of Texas, Houston, TX 77225-0334, USA. Angela.M.Nanos@uth.tmc.edu
Adeline Deyrieux
Xue-lin Bian
Germán Rosas-Acosta
Van G Wilson
Bioscience Research · USTexas A&M University · USTexas A&M University System · USThe University of Texas at El Paso · USUniversity of Houston · US

Funding

Cellular Regulation of Papillomavirus E1 FunctionR01CA089298 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI WILSON, VAN G. · 2003 to 2007
$1.4M
EFFECTS OF A PARENT VIDEO ON HISPANIC CHILDREN'S WEIGHTR21CA089289 · NCI · STANFORD UNIVERSITY · PI KILLEN, JOEL D · 2001 to 2002
$314k
NCI NIH HHS CA089289NCI NIH HHS R01 CA089298NCI NIH HHS R21 CA089289
6 · The paper itself

Abstract

Regulation of the sumoylation system at the level of gene expression has not yet been explored. To begin to define transcriptional regulatory features, the promoter region for the SUMO1 gene was cloned from human genomic DNA and characterized. Initially, a 532 base pair fragment upstream of and including the predicted SUMO1 transcription start site (TSS) was cloned and shown to possess promoter activity. Subsequent deletion analysis showed that a smaller fragment containing 158 bp upstream of the TSS region exhibited basal promoter activity in both human and rodent cell lines. Within this basal promoter fragment, there were predicted binding sites for numerous transcription factors, including the nude mouse gene product, Whn (FoxN1). Electrophoretic mobility shift assays showed that Whn could bind to an ACGC motif adjacent to the TSR, and in transfection studies Whn stimulated a 3-fold increase in transcription from this cloned promoter in keratinocytes (HaCaT cells). Mutation of the ACGC motif abrogated both Whn binding and transcriptional activation, indicating that the Whn effect is likely due to direct interaction with this promoter element. Consistent with these observations on the cloned promoter region, Whn also modestly stimulated transcription from the endogenous, genomic SUMO1 promoter in HaCaT cells, consistent with Whn potentially playing a regulatory role for SUMO1 transcription in keratinocytes.

Indexed as

AnimalsBase SequenceBinding SitesCell LineCloning, MolecularDNA PrimersElectrophoretic Mobility Shift AssayForkhead Transcription FactorsGene Expression RegulationHumansKeratinocytesMiceMolecular Sequence DataMutationPromoter Regions, GeneticReverse Transcriptase Polymerase Chain ReactionDNA PrimersForkhead Transcription FactorsSUMO-1 ProteinSUMO1 protein, humanWhn protein

Identifiers

PMID19242820
PMCPMC3083827
OpenAlexW2066175212

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.