Evidence map›Paper›PMID 19241377›Full record

ArticleProtein science : a publication of the Protein Society2009

Fast structural dynamics in reduced and oxidized cytochrome c.

Weixia Liu, Jon N Rumbley, S Walter Englander, A Joshua Wand

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. The dynamical response of hen egg white lysozyme to the binding of a carbohydrate ligand.Protein science : a publication of the Protein Society · 2012
    Article
  8. Flexibility of the metal-binding region in apo-cupredoxins.Proceedings of the National Academy of Sciences of the United States of America · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Weixia LiuDepartment of Biochemistry and Biophysics, Johnson Research Foundation, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6059, USA.
Jon N Rumbley
S Walter Englander
A Joshua Wand

Funding

Protein structure and function by hydrogen exchange mass spectrometry analysisR01GM031847 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ENGLANDER, S. WALTER · 1985 to 2017
$6.3M
STRUCTURAL STUDIES OF CALMODULIN-PEPTIDE COMPLEXESR01DK039806 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2011
$3.5M
STRUCTURE &DYNAMICS OF FREE &COMPLEXED CYTOCHROMES CR01GM035940 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1986 to 2007
$2.8M
NIDDK NIH HHS DK39806NIGMS NIH HHS GM31847NIGMS NIH HHS GM35940NIGMS NIH HHS R01 GM031847
6 · The paper itself

Abstract

The sub-nanosecond structural dynamics of reduced and oxidized cytochrome c were characterized. Dynamic properties of the protein backbone measured by amide (15)N relaxation and side chains measured by the deuterium relaxation of methyl groups change little upon change in the redox state. These results imply that the solvent reorganization energy associated with electron transfer is small, consistent with previous theoretical analyses. The relative rigidity of both redox states also implies that dynamic relief of destructive electron transfer pathway interference is not operational in free cytochrome c.

Indexed as

AnimalsCytochromes cHorsesMonte Carlo MethodNuclear Magnetic Resonance, BiomolecularOxidation-ReductionProtein ConformationCytochromes c

Identifiers

PMID19241377
PMCPMC2760373

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.