Evidence map›Paper›PMID 19240697›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2009

Genomic and functional assays demonstrate reduced gammaretroviral vector genotoxicity associated with use of the cHS4 chromatin insulator.

Chang Long Li, Ding Xiong, George Stamatoyannopoulos, David W Emery

Open access · bronzeAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
5.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 63 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Gene Therapy for β-Hemoglobinopathies.Molecular therapy : the journal of the American Society of Gene Therapy · 2017
    Review
  7. Article
  8. Review
  9. Article
  10. Insulated Foamy Viral Vectors.Human gene therapy · 2016
    Article
  11. Article
  12. Gene therapy for hemoglobin disorders - a mini-review.Journal of rare diseases research & treatment · 2016
    Article
  13. Article
  14. Article
  15. Uncovering and dissecting the genotoxicity of self-inactivating lentiviral vectors in vivo.Molecular therapy : the journal of the American Society of Gene Therapy · 2014
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Chang Long LiDivision of Medical Genetics, Department of Medicine, University of Washington, Seattle, Washington 98195-7720, USA.
Ding Xiong
George Stamatoyannopoulos
David W Emery
State Key Laboratory of BiotherapyUniversity of Washington Medical Center · US

Funding

VECTOR CONSTRUCTIONS FOR GENE THERAPY OF SICKLE CELL DISEASEP01HL053750 · NHLBI · UNIVERSITY OF WASHINGTON · PI RUSSELL, DAVID W · 1994 to 2014
$30.4M
OVERCOMING POSITION EFFECTS WITH CHROMATIN INSULATORSR01HL075713 · NHLBI · UNIVERSITY OF WASHINGTON · PI EMERY, DAVID W · 2004 to 2008
$1.7M
NHLBI NIH HHS P01 HL053750NHLBI NIH HHS P01 HL53750NHLBI NIH HHS R01 HL075713NHLBI NIH HHS R01 HL75713
6 · The paper itself

Abstract

Interest in the use of recombinant retroviral vectors for clinical gene therapy has been tempered by evidence of vector-mediated genotoxicity involving the activation of cellular oncogenes flanking sites of vector integration. We report here that the rate of gammaretroviral vector genotoxicity can be significantly reduced by addition of the cHS4 chromatin insulator, based on two complementary approaches for assessing vector-mediated genotoxicity. One approach involves the direct, genomewide assessment of cellular gene dysregulation using panels of transduced cell clones and genomic microarrays, whereas the other involves the functional assessment of malignant transformation using a factor-dependent cell line. Both assays are robust and quantitative, and indicate the cHS4 chromatin insulator can reduce vector-mediated genotoxicity approximately sixfold (ranged three to eight fold). These approaches also provide a means for assessing various aspects of vector-mediated genotoxicity, including the overall rate of cellular gene dysregulation, the potential influence of vector provirus over large genomic distances, and the involvement of oncogenic pathways in vector-mediated malignant transformation.

Indexed as

Insulator ElementsAnimalsBlotting, SouthernCell LineChromatinFemaleFlow CytometryGammaretrovirusGenetic VectorsHumansMiceMice, Inbred C3HRecombination, GeneticChromatin

Identifiers

PMID19240697
PMCPMC2835102
OpenAlexW2003563611

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.