Evidence map›Paper›PMID 19239479›Full record

ArticleCellular microbiology2009

A developmentally regulated Myb domain protein regulates expression of a subset of stage-specific genes in Entamoeba histolytica.

Gretchen M Ehrenkaufer, Jason A Hackney, Upinder Singh

Open access · bronzeAbstract read
In one paragraph

Article in Cellular microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Amoebae: beyond pathogens- exploring their benefits and future potential.Frontiers in cellular and infection microbiology · 2024
    Review
  5. Review
  6. Article
  7. Article
  8. A cell-cycle-dependent GARP-like transcriptional repressor regulates the initiation of differentiation inProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  9. Review
  10. Entamoeba stage conversion: progress and new insights.Current opinion in microbiology · 2020
    Review
  11. Article
  12. Article
  13. The NADFrontiers in cellular and infection microbiology · 2020
    Article
  14. Article
  15. An NADeLife · 2018
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Gretchen M EhrenkauferDepartment of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA 94305-5107, USA.
Jason A Hackney
Upinder Singh
Stanford University · US

Funding

MOLECULAR BASIS OF HOST-PARASITE INTERACTIONT32AI007328 · NIAID · STANFORD UNIVERSITY · PI JUSTIN L SONNENBURG · 1987 to 2026
$11.9M
Identification of Transcriptional Regulatory Networks in Entamoeba HistolyticaR21AI069382 · NIAID · STANFORD UNIVERSITY · PI SINGH, UPINDER · 2007 to 2008
$431k
Developing Tools to Study Encystation in Entamoeba HistolyticaR21AI068899 · NIAID · STANFORD UNIVERSITY · PI SINGH, UPINDER · 2006 to 2007
$423k
NIAID NIH HHS AI-068899NIAID NIH HHS AI-069382NIAID NIH HHS R21 AI068899NIAID NIH HHS R21 AI069382NIAID NIH HHS T32 AI007328NIAID NIH HHS T32 AI-07328
6 · The paper itself

Abstract

Conversion between a cyst and trophozoite stage is essential to disease transmission and pathogenesis in the parasitic protist Entamoeba histolytica. A transcriptomic analysis of E. histolytica cysts and trophozoites has recently been accomplished, but the molecular basis of the regulation of encystation is not known. We have now identified a developmentally regulated Myb protein (belonging to the SHAQKY family of Myb proteins), which controls expression of a subset of amoebic stage-specific genes. Overexpression of the nuclear localized Myb protein resulted in a transcriptome that overlapped significantly with the expression profile of amoebic cysts. Analysis of promoters from genes regulated by the Myb protein identified a CCCCCC promoter motif to which amoebic nuclear protein(s) bind in a sequence-specific manner. Chromatin immunoprecipitation demonstrated that the E. histolytica Myb protein binds to promoters of genes which contain the CCCCCC motif and which are regulated by the Myb protein. This work is the first identification of a transcription factor, which regulates expression of a subset of stage-specific genes in E. histolytica. Identification of transcriptional regulatory networks that control developmental pathways will provide novel insights into the biology of this important human pathogen.

Indexed as

Gene Expression RegulationAmino Acid SequenceAnimalsBinding SitesChromatin ImmunoprecipitationDNA, ProtozoanElectrophoretic Mobility Shift AssayEntamoeba histolyticaHumansMolecular Sequence DataPromoter Regions, GeneticProtein BindingProtozoan ProteinsSequence AlignmentTranscription FactorsDNA, ProtozoanProtozoan ProteinsTranscription Factors

Identifiers

PMID19239479
PMCPMC3424735
OpenAlexW2018465082

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.