ArticleBioinformation2008
FlexPred: a web-server for predicting residue positions involved in conformational switches in proteins.
Article in Bioinformation, 2008. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
17 citing papers in PubMed.
- Characterization of SdGA, a cold-adapted glucoamylase fromBiotechnology reports (Amsterdam, Netherlands) · 2021Article
- Computational Analysis of Missense Variants in the Human Transmembrane Protease Serine 2 (BioMed research international · 2021Article
- Investigation of sequence features of hinge-bending regions in proteins with domain movements using kernel logistic regression.BMC bioinformatics · 2020Article
- Analysis of protein missense alterations by combining sequence- and structure-based methods.Molecular genetics & genomic medicine · 2020Article
- Structural and Functional Attributes of the Interleukin-36 Receptor.The Journal of biological chemistry · 2016Article
- DFLpred: High-throughput prediction of disordered flexible linker regions in protein sequences.Bioinformatics (Oxford, England) · 2016Article
- Palmitoylation controls DLK localization, interactions and activity to ensure effective axonal injury signaling.Proceedings of the National Academy of Sciences of the United States of America · 2016Article
- Prediction of neddylation sites from protein sequences and sequence-derived properties.BMC bioinformatics · 2015Article
- Protein flexibility in the light of structural alphabets.Frontiers in molecular biosciences · 2015Review
- Predicting sumoylation sites using support vector machines based on various sequence features, conformational flexibility and disorder.BMC genomics · 2014Article
- SDS, a structural disruption score for assessment of missense variant deleteriousness.Frontiers in genetics · 2014Article
- An association-adjusted consensus deleterious scheme to classify homozygous Mis-sense mutations for personal genome interpretation.BioData mining · 2013Article
- Structure-function studies on non-synonymous SNPs of chemokine receptor gene implicated in cardiovascular disease: a computational approach.The protein journal · 2013Article
- PredyFlexy: flexibility and local structure prediction from sequence.Nucleic acids research · 2012Article
- Computer-Aided Protein Directed Evolution: a Review of Web Servers, Databases and other Computational Tools for Protein Engineering.Computational and structural biotechnology journal · 2012Review
- Prediction of protein motions from amino acid sequence and its application to protein-protein interaction.BMC structural biology · 2010Article
- A sequence-based hybrid predictor for identifying conformationally ambivalent regions in proteins.BMC genomics · 2009Article
Corrections and comments
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Authors and funding
2 authors.
Funding
Abstract
unlabelledConformational switches observed in the protein backbone play a key role in a variety of fundamental biological activities. This paper describes a web-server that implements a pattern recognition algorithm trained on the examples from the Database of Macromolecular Movements to predict residue positions involved in conformational switches. Prediction can be performed at an adjustable false positive rate using a user-supplied protein sequence in FASTA format or a structure in a Protein Data Bank (PDB) file. If a protein sequence is submitted, then the web-server uses sequence-derived information only (such as evolutionary conservation of residue positions). If a PDB file is submitted, then the web-server uses sequence-derived information and residue solvent accessibility calculated from this file. AVAILABILITY: FlexPred is publicly available at http://flexpred.rit.albany.edu.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.