Evidence map›Paper›PMID 19237546›Full record

ArticleThe Journal of biological chemistry2009

Solution structure and backbone dynamics of streptopain: insight into diverse substrate specificity.

Chih-Chieh Wang, Hsiang-Chee Houng, Chun-Liang Chen, Pei-Ju Wang, Chih-Feng Kuo, Yee-Shin Lin, Jiunn-Jong Wu, Ming T Lin, Ching-Chuan Liu, Wenya Huang and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

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  11. Functional aspects of protein flexibility.Cellular and molecular life sciences : CMLS · 2009
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Chih-Chieh WangDepartments of Biochemistry, Microbiology and Immunology, Medical Technology, and Pediatrics, National Cheng Kung University College of Medicine, 1 University Road, Tainan 701, Taiwan.
Hsiang-Chee Houng
Chun-Liang Chen
Pei-Ju Wang
Chih-Feng Kuo
Yee-Shin Lin
Jiunn-Jong Wu
Ming T Lin
Ching-Chuan Liu
Wenya Huang
Woei-Jer Chuang
National Cheng Kung University · TWTzu Chi University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Streptococcal pyrogenic exotoxin B (SPE B) is a cysteine protease expressed by Streptococcus pyogenes. The D9N, G163S, G163S/A172S, and G239D mutant proteins were expressed to study the effect of the allelic variants on their protease activity. In contrast to other mutants, the G239D mutant was approximately 12-fold less active. The Gly-239 residue is located within the C-terminal S230-G239 region, which cannot be observed in the x-ray structure. The three-dimensional structure and backbone dynamics of the 28-kDa mature SPE B (mSPE B) were determined. Unlike the x-ray structure of the 40-kDa zymogen SPE B (proSPE B), we observed the interactions between the C-terminal loop and the active site residues in mSPE B. The structural differences between mSPE B and proSPE B were the conformation of the C-terminal loop and the orientation of the catalytic His-195 residue, suggesting that activation and inactivation of SPE B is involved in the His-195 side-chain rotation. Dynamics analysis of mSPE B and the mSPE B/inhibitor complexes showed that the catalytic and C-terminal loops were the most flexible regions with low order parameter values of 0.5 to 0.8 and exhibited the motion on the ps/ns timescale. These findings suggest that the flexible C-terminal loop of SPE B may play an important role in controlling the substrate binding, resulting in its broad substrate specificity.

Indexed as

Cysteine EndopeptidasesProtein Structure, TertiaryAmino Acid SequenceCrystallography, X-RayModels, MolecularMolecular Sequence DataMutationNuclear Magnetic Resonance, BiomolecularStreptococcus pyogenesSubstrate SpecificityCysteine Endopeptidasesstreptopain

Identifiers

PMID19237546
PMCPMC2667781
OpenAlexW1977459589

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.