Evidence map›Paper›PMID 19234449›Full record

ArticleNature biotechnology2009

A conditional transposon-based insertional mutagenesis screen for genes associated with mouse hepatocellular carcinoma.

Vincent W Keng, Augusto Villanueva, Derek Y Chiang, Adam J Dupuy, Barbara J Ryan, Ilze Matise, Kevin A T Silverstein, Aaron Sarver, Timothy K Starr, Keiko Akagi and 8 more

Open access · greenAbstract read
In one paragraph

Article in Nature biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 133 papers.

0numbers the graph read from it
0cells of the map it votes in
133citing papers in PubMed
33.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

133 citing papers in PubMed, 200 citations in OpenAlex.

  1. Journal for immunotherapy of cancer · 2026
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  15. Genetic and Cellular Contributions to Liver Regeneration.Cold Spring Harbor perspectives in biology · 2021
    Article
  16. Review
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  18. Exploring liver cancer biology through functional genetic screens.Nature reviews. Gastroenterology & hepatology · 2021
    Review
  19. Article
  20. Review

73 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 10 institutions in 3 countries.

Vincent W KengMasonic Cancer Center, University of Minnesota, Minneapolis, Minnesota 55455, USA.
Augusto Villanueva
Derek Y Chiang
Adam J Dupuy
Barbara J Ryan
Ilze Matise
Kevin A T Silverstein
Aaron Sarver
Timothy K Starr
Keiko Akagi
Lino Tessarollo
Lara S Collier
Scott Powers
Scott W Lowe
Nancy A Jenkins
Neal G Copeland
Josep M Llovet
David A Largaespada
University of Minnesota · USCold Spring Harbor Laboratory · USInstitute of Molecular and Cell Biology · SGNational Cancer Institute · USUniversity of Minnesota System · USBroad Institute · USHospital Clínic de Barcelona · ESInstitució Catalana de Recerca i Estudis Avançats · ESUniversity of Iowa · USUniversity of Wisconsin–Madison · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
MOUSE MODELS OF MYELOID LEUKEMIAU01CA084221 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHANNON, KEVIN M. · 1999 to 2009
$8.7M
Sleeping Beauty for uncovering cancer genes in miceR01CA113636 · NCI · UNIVERSITY OF MINNESOTA · PI LARGAESPADA, DAVID ANDREW · 2006 to 2016
$2.5M
Integrative genomic analysis in hepatocellular carcinomaR01DK076986 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI LLOVET, JOSEP M · 2007 to 2011
$1.3M
Sleeping Beauty for cancer gene discoveryK01CA122183 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI COLLIER, LARA S · 2006 to 2010
$729k
Generation of mouse model of human cancerZICBC011198 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI TESSAROLLO, LINO · 2009 to 2009
$291k
NCI NIH HHS 1K01CA122183-01NCI NIH HHS K01 CA122183NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA113636NCI NIH HHS U01 CA084221NCI NIH HHS U01 CA84221NIDDK NIH HHS 1R01DK076986-01NIDDK NIH HHS R01 DK076986
6 · The paper itself

Abstract

We describe a system that permits conditional mobilization of a Sleeping Beauty (SB) transposase allele by Cre recombinase to induce cancer specifically in a tissue of interest. To demonstrate its potential for developing tissue-specific models of cancer in mice, we limit SB transposition to the liver by placing Cre expression under the control of an albumin enhancer/promoter sequence and screen for hepatocellular carcinoma (HCC)-associated genes. From 8,060 nonredundant insertions cloned from 68 tumor nodules and comparative analysis with data from human HCC samples, we identify 19 loci strongly implicated in causing HCC. These encode genes, such as EGFR and MET, previously associated with HCC and others, such as UBE2H, that are potential new targets for treating this neoplasm. Our system, which could be modified to drive transposon-based insertional mutagenesis wherever tissue-specific Cre expression is possible, promises to enhance understanding of cancer genomes and identify new targets for therapeutic development.

Indexed as

AdenomaAnimalsCarcinoma, HepatocellularDNA Transposable ElementsGene Expression RegulationGenes, erbB-1Genetic TechniquesHumansIntegrasesLiverLiver Neoplasms, ExperimentalMaleMiceMice, TransgenicMutagenesis, InsertionalTransposasesCre recombinaseDNA Transposable ElementsIntegrasesTransposasesUbiquitin-Conjugating Enzymes

Identifiers

PMID19234449
PMCPMC2712727
OpenAlexW2166447146

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.