Evidence map›Paper›PMID 19234124›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2009

Secondary anchor polymorphism in the HA-1 minor histocompatibility antigen critically affects MHC stability and TCR recognition.

Sarah Nicholls, Karen P Piper, Fiyaz Mohammed, Timothy R Dafforn, Stefan Tenzer, Mahboob Salim, Premini Mahendra, Charles Craddock, Peter van Endert, Hansjörg Schild and 4 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 42 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Structural Prediction of Peptide-MHC Binding Modes.Methods in molecular biology (Clifton, N.J.) · 2022
    Review
  7. Review
  8. TCR Recognition of Peptide-MHC-I: Rule Makers and Breakers.International journal of molecular sciences · 2020
    Review
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Minor histocompatibility antigens and the maternal immune response to the fetus during pregnancy.American journal of reproductive immunology (New York, N.Y. : 1989) · 2013
    Review
  18. Review
  19. Review
  20. Structural and energetic evidence for highly peptide-specific tumor antigen targeting via allo-MHC restriction.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 4 countries.

Sarah NichollsCancer Research UK Institute for Cancer Studies, Edgbaston, Birmingham B15 2TT, United Kingdom.
Karen P Piper
Fiyaz Mohammed
Timothy R Dafforn
Stefan Tenzer
Mahboob Salim
Premini Mahendra
Charles Craddock
Peter van Endert
Hansjörg Schild
Mark Cobbold
Victor H Engelhard
Paul A H Moss
Benjamin E Willcox
Cancer Research UK · GBUniversity Hospitals Birmingham NHS Foundation Trust · GBJohannes Gutenberg University Mainz · DECarter Center · USDélégation Paris 5 · FRQuantitative BioSciences · USUniversity of Birmingham · GB

Funding

Antigenic Determinants on HLA-B7 and -A2R01CA134060 · NCI · UNIVERSITY OF VIRGINIA · PI ENGELHARD, VICTOR H · 2008 to 2012
$2.4M
ANTIGENIC DETERMINANTS ON HLA-B7 AND -A2R01AI020963 · NIAID · UNIVERSITY OF VIRGINIA CHARLOTTESVILLE · PI ENGELHARD, VICTOR H · 1985 to 2006
$1.8M
Biotechnology and Biological Sciences Research CouncilMedical Research Council G108/574Medical Research Council G120/768NCI NIH HHS R01 CA134060NIAID NIH HHS R01 AI020963
6 · The paper itself

Abstract

T cell recognition of minor histocompatibility antigens (mHags) underlies allogeneic immune responses that mediate graft-versus-host disease and the graft-versus-leukemia effect following stem cell transplantation. Many mHags derive from single amino acid polymorphisms in MHC-restricted epitopes, but our understanding of the molecular mechanisms governing mHag immunogenicity and recognition is incomplete. Here we examined antigenic presentation and T-cell recognition of HA-1, a prototypic autosomal mHag derived from single nucleotide dimorphism (HA-1(H) versus HA-1(R)) in the HMHA1 gene. The HA-1(H) peptide is restricted by HLA-A2 and is immunogenic in HA-1(R/R) into HA-1(H) transplants, while HA-1(R) has been suggested to be a "null allele" in terms of T cell reactivity. We found that proteasomal cleavage and TAP transport of the 2 peptides is similar and that both variants can bind to MHC. However, the His>Arg change substantially decreases the stability and affinity of HLA-A2 association, consistent with the reduced immunogenicity of the HA-1(R) variant. To understand these findings, we determined the structure of an HLA-A2-HA-1(H) complex to 1.3A resolution. Whereas His-3 is accommodated comfortably in the D pocket, incorporation of the lengthy Arg-3 is predicted to require local conformational changes. Moreover, a soluble TCR generated from HA-1(H)-specific T-cells bound HA-1(H) peptide with moderate affinity but failed to bind HA-1(R), indicating complete discrimination of HA-1 variants at the level of TCR/MHC interaction. Our results define the molecular mechanisms governing immunogenicity of HA-1, and highlight how single amino acid polymorphisms in mHags can critically affect both MHC association and TCR recognition.

Indexed as

Polymorphism, GeneticArginineATP-Binding Cassette TransportersATP Binding Cassette Transporter, Subfamily B, Member 2Cell SeparationCircular DichroismCrystallography, X-RayEpitopesHLA-A2 AntigenHumansLeukemia, Myelogenous, Chronic, BCR-ABL PositiveMinor Histocompatibility AntigensProteasome Endopeptidase ComplexProtein BindingProtein StabilityProtein Structure, SecondaryArginineATP-Binding Cassette TransportersATP Binding Cassette Transporter, Subfamily B, Member 2EpitopesHLA-A2 AntigenMinor Histocompatibility AntigensProteasome Endopeptidase ComplexReceptors, Antigen, T-CellTAP1 protein, human

Identifiers

PMID19234124
PMCPMC2656175
OpenAlexW1979390270

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.