Evidence map›Paper›PMID 19231875›Full record

ArticleBiochemistry2009

Escherichia coli QueD is a 6-carboxy-5,6,7,8-tetrahydropterin synthase.

Reid M McCarty, Arpád Somogyi, Vahe Bandarian

Abstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Biosynthesis and function of 7-deazaguanine derivatives in bacteria and phages.Microbiology and molecular biology reviews : MMBR · 2024
    Review
  6. Article
  7. Metal retention and replacement in QueD2 protect queuosine-tRNA biosynthesis in metal-starvedProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. WhollymBio · 2017
    Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Reid M McCartyDepartment of Biochemistry and Molecular Biophysics, University of Arizona, Tucson, Arizona 85721, USA.
Arpád Somogyi
Vahe Bandarian
University of Arizona · US

Funding

Biosynthesis of Deazapurine-Containing MetabolitesR01GM072623 · NIGMS · UNIVERSITY OF UTAH · PI BANDARIAN, VAHE · 2005 to 2017
$3.9M
Acquisition of a Linear Trap-Fourier Transform Mass SpectrometerS10RR023029 · NCRR · UNIVERSITY OF ARIZONA · PI WYSOCKI, VICKI H. · 2007 to 2007
$925k
NCRR NIH HHS 1S10RR 23029NCRR NIH HHS S10 RR023029NIGMS NIH HHS R01 GM072623NIGMS NIH HHS R01 GM 72623
6 · The paper itself

Abstract

To elucidate the early steps required during biosynthesis of a broad class of 7-deazapurine-containing natural products, we have studied the reaction catalyzed by Escherichia coli QueD, a 6-pyruvoyl-5,6,7,8-tetrahydropterin synthase (PTPS) homologue possibly involved in queuosine biosynthesis. While mammalian PTPS homologues convert 7,8-dihydroneopterin triphosphate (H(2)NTP) to 6-pyruvoyltetrahydropterin (PPH(4)) in biopterin biosynthesis, E. coli QueD catalyzes the conversion of H(2)NTP to 6-carboxy-5,6,7,8-tetrahydropterin (CPH(4)). E. coli QueD can also convert PPH(4) and sepiapterin to CPH(4), allowing a mechanism to be proposed.

Indexed as

Carbon-Oxygen LyasesEscherichia coliEscherichia coli ProteinsNeopterinPteridines2-amino-4-hydroxy-6,7-dimethyl-5,6,7,8-tetrahydropteridineCarbon-Oxygen Lyasesdihydroneopterin triphosphateEscherichia coli ProteinsNeopterinPteridinesQueD protein, E coli

Identifiers

PMID19231875
PMCPMC3227869
OpenAlexW2010387767

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.