ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2009
A COSII genetic map of the pepper genome provides a detailed picture of synteny with tomato and new insights into recent chromosome evolution in the genus Capsicum.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.
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59 citing papers in PubMed, 163 citations in OpenAlex.
- The gap-free assembly of pepper genome reveals transposable-element-driven expansion and rapid evolution of pericentromeres.Plant communications · 2025Article
- Unravelling inversions: Technological advances, challenges, and potential impact on crop breeding.Plant biotechnology journal · 2024Review
- Genetic analysis and QTL mapping of domestication-related traits in chili pepper (Frontiers in genetics · 2023Article
- Induced mutation in ELONGATED HYPOCOTYL5 abolishes anthocyanin accumulation in the hypocotyl of pepper.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Identifying Genomic Regions Targeted During Eggplant Domestication Using Transcriptome Data.The Journal of heredity · 2021Article
- Frequency, Origins, and Evolutionary Role of Chromosomal Inversions in Plants.Frontiers in plant science · 2020Review
- Development and Application of InDel Markers for Capsicum spp. Based on Whole-Genome Re-Sequencing.Scientific reports · 2019Article
- Genome-wide analysis of genes encoding MBD domain-containing proteins from tomato suggest their role in fruit development and abiotic stress responses.Molecular biology reports · 2018Article
- Comparative genome-wide characterization leading to simple sequence repeat marker development for Nicotiana.BMC genomics · 2018Article
- Mapping of fruit length related QTLs in interspecific cross (Breeding science · 2018Article
- Construction of a high-density genetic map and identification of QTLs for cucumber mosaic virus resistance in pepper (Breeding science · 2018Article
- Reference quality assembly of the 3.5-Gb genome ofHorticulture research · 2018Article
- Identification ofFrontiers in plant science · 2018Article
- Genetic and biochemical analysis reveals linked QTLs determining natural variation for fruit post-harvest water loss in pepper (Capsicum).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Conservation and Dispersion of Genes Conferring Resistance to Tomato Begomoviruses between Tomato and Pepper Genomes.Frontiers in plant science · 2017Article
- Genome-wide SNP discovery and population structure analysis in pepper (Capsicum annuum) using genotyping by sequencing.BMC genomics · 2016Article
- Development of a SNP array and its application to genetic mapping and diversity assessment in pepper (Capsicum spp.).Scientific reports · 2016Article
- Identification and expression profiling of DNA methyltransferases during development and stress conditions in Solanaceae.Functional & integrative genomics · 2016Article
- Combined Use of Molecular Markers and High-Resolution Melting (HRM) to Assess Chromosome Dosage in Potato Hybrids.The Journal of heredity · 2016Article
- New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL.Frontiers in plant science · 2016Article
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
Abstract
We report herein the development of a pepper genetic linkage map which comprises 299 orthologous markers between the pepper and tomato genomes (including 263 conserved ortholog set II or COSII markers). The expected position of additional 288 COSII markers was inferred in the pepper map via pepper-tomato synteny, bringing the total orthologous markers in the pepper genome to 587. While pepper maps have been previously reported, this is the first complete map in the sense that all markers could be placed in 12 linkage groups corresponding to the 12 chromosomes. The map presented herein is relevant to the genomes of cultivated C. annuum and wild C. annuum (as well as related Capsicum species) which differ by a reciprocal chromosome translocation. This map is also unique in that it is largely based on COSII markers, which permits the inference of a detailed syntenic relationship between the pepper and tomato genomes-shedding new light on chromosome evolution in the Solanaceae. Since divergence from their last common ancestor is approximately 20 million years ago, the two genomes have become differentiated by a minimum number of 19 inversions and 6 chromosome translocations, as well as numerous putative single gene transpositions. Nevertheless, the two genomes share 35 conserved syntenic segments (CSSs) within which gene/marker order is well preserved. The high resolution COSII synteny map described herein provides a platform for cross-reference of genetic and genomic information (including the tomato genome sequence) between pepper and tomato and therefore will facilitate both applied and basic research in pepper.
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