Evidence map›Paper›PMID 19229499›Full record

ArticleJournal of microbiology (Seoul, Korea)2009

Molecular cloning of the phospholipase D gene from Streptomyces sp. YU100 and its expression in Escherichia coli.

Ji-Seon Lee, Munkhtsetseg Bat-Ochir, Atanas V Demirev, Doo Hyun Nam

Abstract read
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In one paragraph

Article in Journal of microbiology (Seoul, Korea), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Acyl Chain Specificity of MarineInternational journal of molecular sciences · 2021
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ji-Seon LeeFaculty of Pharmacy, Yeungnam University, Gyongsan 712-749, Republic of Korea.
Munkhtsetseg Bat-Ochir
Atanas V Demirev
Doo Hyun Nam
Yeungnam University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gene for phospholipase D (PLD) of Streptomyces sp. YU100 was cloned from lambda phage library and heterologously expressed in Escherichia coli. Using an amplified gene fragment based on the consensus sequences of streptomycetes PLDs, lambda phage library of Streptomyces sp. YU100 chromosomal DNA was screened. The sequencing result of BamHI-digested 3.8 kb fragment in a positive phage clone revealed the presence of an open reading frame of a full sequence of PLD gene encoding a 540-amino acid protein including 33-amino acid signal peptide. The deduced amino acid sequence showed a high homology with other Streptomyces PLDs, having the highly conserved 'HKD' motifs. The PLD gene excluding signal peptide sequence was amplified and subcloned into a pET-32b(+) expression vector in E. coli BL21(DE3). The recombinant PLD was purified by nickel affinity chromatography and compared the enzyme activity with wild-type PLD. The results imply that the recombinant PLD produced by E. coli had the nearly same enzyme activity as PLD from Streptomyces sp. YU100.

Indexed as

Escherichia coliStreptomycesAmino Acid MotifsAmino Acid SequenceChromatography, AffinityCloning, MolecularGenes, BacterialMolecular Sequence DataPhospholipase DRecombinant ProteinsSequence AlignmentSequence Analysis, DNAPhospholipase DRecombinant Proteins

Identifiers

PMID19229499
OpenAlexW2154325645

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.