Evidence map›Paper›PMID 19228426›Full record

ArticleBMC microbiology2009

Correlations of mutations in katG, oxyR-ahpC and inhA genes and in vitro susceptibility in Mycobacterium tuberculosis clinical strains segregated by spoligotype families from tuberculosis prevalent countries in South America.

Elis R Dalla Costa, Marta O Ribeiro, Márcia S N Silva, Liane S Arnold, Diana C Rostirolla, Patricia I Cafrune, Roger C Espinoza, Moises Palaci, Maria A Telles, Viviana Ritacco and 10 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it, 106 citations in OpenAlex.

  1. Pooled it
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  14. Frequency of the Mycobacterium tuberculosis RDBMC infectious diseases · 2019
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  18. Comparative Genome Analysis of 2Evolutionary bioinformatics online · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 14 institutions in 5 countries.

Elis R Dalla CostaState Foundation for Production and Research in Health (FEPPS), Porto Alegre, Brazil. erdallacosta@yahoo.com.br
Marta O Ribeiro
Márcia S N Silva
Liane S Arnold
Diana C Rostirolla
Patricia I Cafrune
Roger C Espinoza
Moises Palaci
Maria A Telles
Viviana Ritacco
Philip N Suffys
Maria L Lopes
Creuza L Campelo
Silvana S Miranda
Kristin Kremer
Pedro E Almeida da Silva
Leila de Souza Fonseca
John L Ho
Afrânio L Kritski
Maria L R Rossetti
Fundação Estadual de Produção e Pesquisa em Saúde · BRUniversidade Federal do Rio de Janeiro · BRAdministración Nacional de Laboratorios e Institutos de Salud · ARCentro Universitário Moura Lacerda · BRCornell University · USFundação Oswaldo Cruz · BRInstituto Adolfo Lutz · BRInstituto Evandro Chagas · BRNational Institute for Public Health and the Environment · NLUniversidade Federal de Minas Gerais · BRUniversidade Federal do Espírito Santo · BRUniversidade Federal do Rio Grande · BRUniversidade Federal do Rio Grande do Sul · BRUniversidade Luterana do Brasil · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMutations associated with resistance to rifampin or streptomycin have been reported for W/Beijing and Latin American Mediterranean (LAM) strain families of Mycobacterium tuberculosis. A few studies with limited sample sizes have separately evaluated mutations in katG, ahpC and inhA genes that are associated with isoniazid (INH) resistance. Increasing prevalence of INH resistance, especially in high tuberculosis (TB) prevalent countries is worsening the burden of TB control programs, since similar transmission rates are noted for INH susceptible and resistant M. tuberculosis strains.

resultsWe, therefore, conducted a comprehensive evaluation of INH resistant M. tuberculosis strains (n = 224) from three South American countries with high burden of drug resistant TB to characterize mutations in katG, ahpC and inhA gene loci and correlate with minimal inhibitory concentrations (MIC) levels and spoligotype strain family. Mutations in katG were observed in 181 (80.8%) of the isolates of which 178 (98.3%) was contributed by the katG S315T mutation. Additional mutations seen included oxyR-ahpC; inhA regulatory region and inhA structural gene. The S315T katG mutation was significantly more likely to be associated with MIC for INH >or=2 microg/mL. The S315T katG mutation was also more frequent in Haarlem family strains than LAM (n = 81) and T strain families.

conclusionOur data suggests that genetic screening for the S315T katG mutation may provide rapid information for anti-TB regimen selection, epidemiological monitoring of INH resistance and, possibly, to track transmission of INH resistant strains.

Indexed as

Drug Resistance, BacterialMutation, MissenseAntitubercular AgentsBacterial ProteinsBacterial Typing TechniquesCluster AnalysisDNA, BacterialDNA FingerprintingGenotypeHumansIsoniazidMicrobial Sensitivity TestsMycobacterium tuberculosisSouth AmericaTuberculosisAntitubercular AgentsBacterial ProteinsDNA, BacterialIsoniazid

Identifiers

PMID19228426
PMCPMC2650697
OpenAlexW2030563651

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.