Evidence map›Paper›PMID 19228114›Full record

ArticleThe Biochemical journal2009

Identification and characterization of the lipid-binding property of GrlR, a locus of enterocyte effacement regulator.

Chacko Jobichen, Aaron Z Fernandis, Adrian Velazquez-Campoy, Ka Yin Leung, Yu-Keung Mok, Markus R Wenk, J Sivaraman

Abstract read
In one paragraph

Article in The Biochemical journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. TheProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chacko JobichenDepartment of Biological Sciences, National University of Singapore, Singapore.
Aaron Z Fernandis
Adrian Velazquez-Campoy
Ka Yin Leung
Yu-Keung Mok
Markus R Wenk
J Sivaraman

Funding

Macromolecular Crystallography at the National Synchrotron Light SourceP41GM103473 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI SWEET, ROBERT M · 2012 to 2013
$4.9M
NIGMS NIH HHS P41 GM103473
6 · The paper itself

Abstract

Lipocalins are a broad family of proteins identified initially in eukaryotes and more recently in Gram-negative bacteria. The functions of lipocalin or lipid-binding proteins are often elusive and very diverse. Recently, we have determined the structure of GrlR (global regulator of LEE repressor), which plays a key role in the regulation of LEE (locus of enterocyte effacement) proteins. GrlR adopts a lipocalin-like fold that is composed of an eight-stranded beta-barrel followed by an alpha-helix at the C-terminus. GrlR has a highly hydrophobic cavity region and could be a potential transporter of lipophilic molecules. To verify this hypothesis, we carried out structure-based analysis of GrlR, determined the structure of the lipid-GrlR complex and measured the binding of lipid to recombinant GrlR by ITC (isothermal titration calorimetry). In addition, we identified phosphatidylglycerol and phosphatidylethanolamine as the endogenously bound lipid species of GrlR using electrospray-ionization MS. Furthermore, we have shown that the lipid-binding property of GrlR is similar to that of its closest lipocalin structural homologue, beta-lactoglobulin. Our studies demonstrate the hitherto unknown lipid-binding property of GrlR.

Indexed as

Amino Acid SequenceBinding SitesEscherichia coli ProteinsHydrophobic and Hydrophilic InteractionsLipocalinsModels, MolecularMolecular Sequence DataPhosphatidylethanolaminesPhosphatidylglycerolsPhosphoproteinsProtein BindingProtein FoldingProtein Structure, TertiaryRepressor ProteinsSequence Homology, Amino AcidEscherichia coli ProteinsGrlR protein, E coliLEE protein, E coliLipocalinsphosphatidylethanolaminePhosphatidylethanolaminesPhosphatidylglycerolsPhosphoproteinsRepressor Proteins

Identifiers

PMID19228114
PMCPMC3672471

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.