ArticlePhysiologia plantarum2009
Proteomic analysis of the secretome of rice calli.
Article in Physiologia plantarum, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
What it found
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Who cites it
25 citing papers in PubMed, 66 citations in OpenAlex.
- Beyond the surface: the plant secretome as a bridge between the cell and its environment.Planta · 2025Review
- Transcriptional Changes in Damask Rose Suspension Cell Culture Revealed by RNA Sequencing.Plants (Basel, Switzerland) · 2024Article
- Secretome analysis revealed that cell wall remodeling and starch catabolism underlie the early stages of somatic embryogenesis inFrontiers in plant science · 2023Article
- Highly Efficient Bioconversion ofInternational journal of molecular sciences · 2022Article
- Plant Cell Wall Proteomes: The Core of Conserved Protein Families and the Case of Non-Canonical Proteins.International journal of molecular sciences · 2022Review
- Comparative secretome analysis between salinity-tolerant and control Chlamydomonas reinhardtii strains.Planta · 2021Article
- Cell Wall Proteome of Wheat Grain Endosperm and Outer Layers at Two Key Stages of Early Development.International journal of molecular sciences · 2019Article
- A GDSL Esterase/Lipase Catalyzes the Esterification of Lutein in Bread Wheat.The Plant cell · 2019Article
- Cell Wall Proteins Play Critical Roles in Plant Adaptation to Phosphorus Deficiency.International journal of molecular sciences · 2019Review
- Arabinosyl Deacetylase Modulates the Arabinoxylan Acetylation Profile and Secondary Wall Formation.The Plant cell · 2019Article
- Plant Cell Wall Proteomics: A Focus on Monocot Species,International journal of molecular sciences · 2019Review
- Large Scale Proteomic Data and Network-Based Systems Biology Approaches to Explore the Plant World.Proteomes · 2018Article
- Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode.Frontiers in plant science · 2017Article
- Proteomic Analysis to Identify Tightly-Bound Cell Wall Protein in Rice Calli.Molecules and cells · 2015Article
- Xylem sap in cotton contains proteins that contribute to environmental stress response and cell wall development.Functional & integrative genomics · 2015Article
- Review
- Uncovering plant-pathogen crosstalk through apoplastic proteomic studies.Frontiers in plant science · 2014Review
- The role of plant cell wall proteins in response to salt stress.TheScientificWorldJournal · 2014Review
- Proteomic analysis of tomato (Solanum lycopersicum) secretome.Journal of plant research · 2013Article
- Large-scale proteomic analysis of the grapevine leaf apoplastic fluid reveals mainly stress-related proteins and cell wall modifying enzymes.BMC plant biology · 2013Article
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The cell wall and extracellular matrix in higher plants include secreted proteins that play critical roles in a wide range of cellular processes, such as structural integrity and biogenesis. Compared with the intensive cell wall proteomic studies in Arabidopsis, the list of cell wall proteins identified in monocot species is lacking. Therefore, we conducted a large-scale proteomic analysis of secreted proteins from rice. Highly purified secreted rice proteins were obtained from the medium of a suspension of callus culture and were analyzed with multidimensional protein identification technology (MudPIT). As a result, we could detect a total of 555 rice proteins by MudPIT analysis. Based on bioinformatic analyses, 27.7% (154 proteins) of the identified proteins are considered to be secreted proteins because they possess a signal peptide for the secretory pathway. Among the 154 identified proteins, 27% were functionally categorized as stress response proteins, followed by metabolic proteins (26%) and factors involved in protein modification (24%). Comparative analysis of cell wall proteins from Arabidopsis and rice revealed that one third of the secreted rice proteins overlapped with those of Arabidopsis. Furthermore, 25 novel rice-specific secreted proteins were found. This work presents the large scale of the rice secretory proteome from culture medium, which contributes to a deeper understanding of the rice secretome.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.