Evidence map›Paper›PMID 19226165›Full record

ArticleJournal of medicinal chemistry2009

Identification of Shc Src homology 2 domain-binding peptoid-peptide hybrids.

Won Jun Choi, Sung-Eun Kim, Andrew G Stephen, Iwona Weidlich, Alessio Giubellino, Fa Liu, Karen M Worthy, Lakshman Bindu, Matthew J Fivash, Marc C Nicklaus and 3 more

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Won Jun ChoiLaboratory of Medicinal Chemistry, Center for Cancer Research, National Cancer Institute, National Insitutes of Health, Frederick, Maryland 21702, USA.
Sung-Eun Kim
Andrew G Stephen
Iwona Weidlich
Alessio Giubellino
Fa Liu
Karen M Worthy
Lakshman Bindu
Matthew J Fivash
Marc C Nicklaus
Donald P Bottaro
Robert J Fisher
Terrence R Burke

Funding

Inhibitors of Tyrosine Kinase-Dependent Signalling as Anti-Cancer AgentsZIABC006198 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BURKE, TERRENCE · 2009 to 2025
$13.7M
In Silico Screening for Cancer TargetsZICBC010639 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI NICKLAUS, MARC · 2009 to 2024
$4.2M
INHIBITORS OF TYROSINE-SPECIFIC PROTEIN KINASES AS ANTICANCER AGENTSZ01BC006198 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BURKE, TERRENCE · 1996 to 2008
$1.6M
Development of Grb2 SH2 Domain Antagonists as Anti-Cancer TherapeuticsZIABC011123 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BOTTARO, DONALD · 2009 to 2015
$951k
Development of Grb2 SH2 Domain Antagonists as Anti-Cancer TherapeuticsZ01BC011123 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI BOTTARO, DONALD · 2008 to 2008
$145k
Intramural NIH HHS Z01 BC006198Intramural NIH HHS Z01 BC011123NCI NIH HHS N01 CO012400NCI NIH HHS N01-CO-12400
6 · The paper itself

Abstract

A fluorescence anisotropy (FA) competition-based Shc Src homology 2 (SH2) domain-binding was established using the high affinity fluorescein isothiocyanate (FITC) containing peptide, FITC-NH-(CH2)4-CO-pY-Q-G-L-S-amide (8; Kd = 0.35 microM). Examination of a series of open-chain bis-alkenylamide containing peptides, prepared as ring-closing metathesis precursors, showed that the highest affinities were obtained by replacement of the original Gly residue with N alpha-substituted Gly (NSG) "peptoid" residues. This provided peptoid-peptide hybrids of the form "Ac-pY-Q-[NSG]-L-amide." Depending on the NSG substituent, certain of these hybrids exhibited up to 40-fold higher Shc SH2 domain-binding affinity than the parent Gly-containing peptide (IC50 = 248 microM) (for example, for N-homoallyl analogue 50, IC50 = 6 microM). To our knowledge, this work represents the first successful example of the application of peptoid-peptide hybrids in the design of SH2 domain-binding antagonists. These results could provide a foundation for further structural optimization of Shc SH2 domain-binding peptide mimetics.

Indexed as

src Homology DomainsAmino Acid SequenceFluorescein-5-isothiocyanateFluorescence PolarizationMagnetic Resonance SpectroscopyMolecular Sequence DataPeptidesPeptoidsReceptor Protein-Tyrosine KinasesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationFluorescein-5-isothiocyanatePeptidesPeptoidsReceptor Protein-Tyrosine KinasesRON protein

Identifiers

PMID19226165
PMCPMC2669314

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.