Evidence map›Paper›PMID 19225103›Full record

ArticleJournal of clinical microbiology2009

Diagnosis of Streptococcus pneumoniae infections in adults with bacteremia and community-acquired pneumonia: clinical comparison of pneumococcal PCR and urinary antigen detection.

Michael D Smith, Carmen L Sheppard, Angela Hogan, Timothy G Harrison, David A B Dance, Petra Derrington, Robert C George, South West Pneumococcus Study Group

Open access · greenAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 3 pooled it
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 3 syntheses or guidelines pooled it, 85 citations in OpenAlex.

  1. Pooled it
  2. Guidelines for the management of adult lower respiratory tract infections--full version.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2011
    Guideline
  3. Pooled it
  4. Review
  5. Journal of clinical microbiology · 2018
    Article
  6. Review
  7. Review
  8. Article
  9. Clinical factors associated with negative urinary antigen tests implemented for the diagnosis of community-acquired pneumococcal pneumonia in adult patients.Medical principles and practice : international journal of the Kuwait University, Health Science Centre · 2015
    Article
  10. Article
  11. Article
  12. Article
  13. What is the role of newer molecular tests in the management of CAP?Infectious disease clinics of North America · 2013
    Review
  14. Article
  15. Microbial diagnostics in patients with presumed severe infection in the emergency department.Medizinische Klinik, Intensivmedizin und Notfallmedizin · 2012
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Interpreting assays for the detection of Streptococcus pneumoniae.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2011
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Michael D SmithDepartment of Microbiology, Musgrove Park Hospital, Taunton, Somerset, United Kingdom. mike.smith@tst.nhs.uk
Carmen L Sheppard
Angela Hogan
Timothy G Harrison
David A B Dance
Petra Derrington
Robert C George
South West Pneumococcus Study Group
Bristol Royal Infirmary · GBGloucestershire Royal Hospital · GBMusgrove Park Hospital · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The diagnosis of severe Streptococcus pneumoniae infection relies heavily on insensitive culture techniques. To improve the usefulness of PCR assays, we developed a dual-PCR protocol (targeted at pneumolysin and autolysin) for EDTA blood samples. This was compared to the Binax NOW S. pneumoniae urine antigen test in patients with bacteremic pneumococcal infections. Patients with nonbacteremic community-acquired pneumonia also were tested by these methods to determine what proportion could be confirmed as pneumococcal infections. A direct comparison was made in a group of patients who each had both tests performed. The Binax NOW S. pneumoniae urine antigen test was positive in 51 of 58 bacteremic pneumococcal cases (sensitivity, 88%; 95% confidence interval [CI], 77 to 95%), whereas the dual PCR was positive in 31 cases (sensitivity, 53.5%; 95% CI, 40 to 67%; P < 0.0001), and all of these had detectable urinary antigens. Both tests gave positive results in 2 of 51 control patients (referred to as other-organism septicemia), giving a specificity of 96% (95% CI, 86.5 to 99.5%). In 77 patients with nonbacteremic community-acquired pneumonia, urinary antigen was detected significantly more often (in 21 patients [27%]) than a positive result by the dual-PCR protocol (6 [8%]) (P = 0.002). The development of a dual-PCR protocol enhanced the sensitivity compared to that of the individual assays, but it is still significantly less sensitive than the Binax NOW urine antigen test, as well as being more time-consuming and expensive. Urinary antigen detection is the nonculture diagnostic method of choice for patients with possible severe pneumococcal infection.

Indexed as

AdolescentAdultAgedAged, 80 and overAntigens, BacterialBacteremiaCommunity-Acquired InfectionsHumansMiddle AgedPneumococcal InfectionsPneumonia, PneumococcalPolymerase Chain ReactionSensitivity and SpecificityStreptococcus pneumoniaeYoung AdultAntigens, Bacterial

Identifiers

PMID19225103
PMCPMC2668348
OpenAlexW2157781947

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.