Evidence map›Paper›PMID 19224922›Full record

ArticleThe Journal of biological chemistry2009

Differential effects of depletion of ARL1 and ARFRP1 on membrane trafficking between the trans-Golgi network and endosomes.

Kirika Nishimoto-Morita, Hye-Won Shin, Hiroko Mitsuhashi, Masashi Kitamura, Qian Zhang, Ludger Johannes, Kazuhisa Nakayama

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

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  18. SNARE complex-mediated degranulation in mast cells.Journal of cellular and molecular medicine · 2012
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Kirika Nishimoto-MoritaGraduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan.
Hye-Won Shin
Hiroko Mitsuhashi
Masashi Kitamura
Qian Zhang
Ludger Johannes
Kazuhisa Nakayama
Kyoto University · JPCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

ARFRP1 and ARL1, which are both ARF-like small GTPases, are mammalian orthologs of yeast Arl3p and Arl1p, respectively. In yeast, Arl3p targeted to trans-Golgi network (TGN) membranes activates Arl1p, and the activated Arl1p in turn recruits a GRIP domain-containing protein; this complex regulates retrograde transport to the TGN and anterograde transport from the TGN. In the present study, using RNA interference-mediated knockdown of ARFRP1 and ARL1, we have examined whether the orthologs of Arl3p-Arl1p-GRIP story serve similar functions in mammalian cells. However, we have unexpectedly found differential roles of ARL1 and ARFRP1. Specifically, ARL1 and ARFRP1 regulate retrograde transport of Shiga toxin to the TGN and anterograde transport of VSVG from the TGN, respectively. Furthermore, we have obtained evidence suggesting that a SNARE complex containing Vti1a, syntaxin 6, and syntaxin 16 is involved in Shiga toxin transport downstream of ARL1.

Indexed as

ADP-Ribosylation FactorsAnimalsBiological TransportEndosomesHeLa CellsHumansIntracellular MembranesMembrane GlycoproteinsMembrane ProteinsQa-SNARE ProteinsQb-SNARE ProteinsRecombinant Fusion ProteinsRNA InterferenceRNA, Small InterferingShiga ToxinSNARE ProteinsADP-ribosylation factor related proteinsADP-Ribosylation FactorsARFRP1 protein, humanG protein, vesicular stomatitis virusMembrane GlycoproteinsMembrane ProteinsQa-SNARE ProteinsQb-SNARE ProteinsRecombinant Fusion ProteinsRNA, Small InterferingShiga ToxinSNARE ProteinsViral Envelope ProteinsVTI1A protein, humanVTI1B protein, human

Identifiers

PMID19224922
PMCPMC2667745
OpenAlexW2080748373

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.