Evidence map›Paper›PMID 19224247›Full record

ArticleMolecular genetics and genomics : MGG2009

Identification and functional validation of a unique set of drought induced genes preferentially expressed in response to gradual water stress in peanut.

Geetha Govind, Vokkaliga ThammeGowda Harshavardhan, Harshavardhan Vokkaliga ThammeGowda, Jayaker Kalaiarasi Patricia, Patricia Jayaker Kalaiarasi, Ramachandra Dhanalakshmi, Dhanalakshmi Ramchandra Iyer, Muthappa Senthil Kumar, Senthil Kumar Muthappa, Nese Sreenivasulu and 3 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Molecular genetics and genomics : MGG, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
9.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 139 citations in OpenAlex.

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  20. Isolation of anFrontiers in plant science · 2017
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Geetha GovindDepartment of Crop Physiology, University of Agricultural Sciences, GKVK, Bangalore, 560 065, Karnataka, India. ggovind@ice.mpg.de
Vokkaliga ThammeGowda Harshavardhan
Harshavardhan Vokkaliga ThammeGowda
Jayaker Kalaiarasi Patricia
Patricia Jayaker Kalaiarasi
Ramachandra Dhanalakshmi
Dhanalakshmi Ramchandra Iyer
Muthappa Senthil Kumar
Senthil Kumar Muthappa
Nese Sreenivasulu
Sreenivasulu Nese
Makarla Udayakumar
Udaya Kumar Makarla
University of Agricultural Sciences, Bangalore · INLeibniz Institute of Plant Genetics and Crop Plant Research · DEMonsanto (India) · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Peanut, found to be relatively drought tolerant crop, has been the choice of study to characterize the genes expressed under gradual water deficit stress. Nearly 700 genes were identified to be enriched in subtractive cDNA library from gradual process of drought stress adaptation. Further, expression of the drought inducible genes related to various signaling components and gene sets involved in protecting cellular function has been described based on dot blot experiments. Fifty genes (25 regulators and 25 functional related genes) selected based on dot blot experiments were tested for their stress responsiveness using northern blot analysis and confirmed their nature of differential regulation under different field capacity of drought stress treatments. ESTs generated from this subtracted cDNA library offered a rich source of stress-related genes including signaling components. Additional 50% uncharacterized sequences are noteworthy. Insights gained from this study would provide the foundation for further studies to understand the question of how peanut plants are able to adapt to naturally occurring harsh drought conditions. At present functional validation cannot be deemed in peanut, hence as a proof of concept seven orthologues of drought induced genes of peanut have been silenced in heterologous N. benthamiana system, using virus induced gene silencing method. These results point out the functional importance for HSP70 gene and key regulators such as Jumonji in drought stress response.

Indexed as

DehydrationDroughtsArachisBase SequenceChlorophyllDNADNA, ComplementaryExpressed Sequence TagsGene LibraryGene SilencingGenes, PlantHSP70 Heat-Shock ProteinsMolecular Sequence DataNicotianaPlant LeavesChlorophyllDNADNA, ComplementaryHSP70 Heat-Shock Proteins

Identifiers

PMID19224247
PMCPMC2757612
OpenAlexW2034094954

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.