Evidence map›Paper›PMID 19223858›Full record

ArticleMolecular psychiatry2009

Genomewide linkage scan of schizophrenia in a large multicenter pedigree sample using single nucleotide polymorphisms.

P A Holmans, B Riley, A E Pulver, M J Owen, D B Wildenauer, P V Gejman, B J Mowry, C Laurent, K S Kendler, G Nestadt and 25 more

Abstract readMulticenter Study
In one paragraph

Article in Molecular psychiatry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Prognostic Value ofBiomolecules · 2022
    Article
  4. Clinical evidence that a dysregulated master neural network modulator may aid in diagnosing schizophrenia.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  5. Co-shared genetics and possible risk gene pathway partially explain the comorbidity of schizophrenia, major depressive disorder, type 2 diabetes, and metabolic syndrome.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2019
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Genome-wide significant linkage of schizophrenia-related neuroanatomical trait to 12q24.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2015
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Association study of 83 candidate genes for bipolar disorder in chromosome 6q selected using an evidence-based prioritization algorithm.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2013
    Article
  16. Article
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  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

35 authors.

P A HolmansDepartment of Psychological Medicine, School of Medicine, Cardiff University, Cardiff, UK.
B Riley
A E Pulver
M J Owen
D B Wildenauer
P V Gejman
B J Mowry
C Laurent
K S Kendler
G Nestadt
N M Williams
S G Schwab
A R Sanders
D Nertney
J Mallet
B Wormley
V K Lasseter
M C O'Donovan
J Duan
M Albus
M Alexander
S Godard
R Ribble
K Y Liang
N Norton
W Maier
G Papadimitriou
D Walsh
M Jay
A O'Neill
F B Lerer
D Dikeos
R R Crowe
J M Silverman
D F Levinson

Funding

MULTICENTER GENETIC STUDIES OF SCHIZOPHRENIAR01MH062276 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI LEVINSON, DOUGLAS FREDERICK · 2000 to 2008
$3.2M
GENOTYPING FOR LOCATING HUMAN DISEASE GENESN01HG065403 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID L · 1996 to 2000
$1.7M
Multicenter Genetic Studies of SchizophreniaR01MH068921 · NIMH · JOHNS HOPKINS UNIVERSITY · PI PULVER, ANN E · 2004 to 2007
$521k
Multicenter Genetic Studies of SchizophreniaR01MH068881 · NIMH · VIRGINIA COMMONWEALTH UNIVERSITY · PI RILEY, BRIEN P · 2004 to 2007
$431k
Multicenter Genetic Studies of SchizophreniaR01MH068922 · NIMH · NORTHSHORE UNIV HEALTHSYSTEM RES INST · PI GEJMAN, PABLO V. · 2004 to 2007
$337k
DIAGNOSTIC CENTER FOR LINKAGE STUDIES OF SCHIZOPHRENIAU01MH046276 · NIMH · WASHINGTON UNIVERSITY · PI CLONINGER, C. ROBERT · 1989 to 1996
–
DIAGNOSTIC CENTER FOR SCHIZOPHRENIA LINKAGE STUDIESU01MH046289 · NIMH · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI KAUFMANN, CHARLES A · 1989 to 1996
–
LINKAGE STUDIES OF SCHIZOPHRENIAU01MH046318 · NIMH · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI TSUANG, MING T. · 1989 to 1996
–
Medical Research Council G0800509Medical Research Council G0801418NHGRI NIH HHS N01 HG065403NIMH NIH HHS 5R01MH068881NIMH NIH HHS 5R01MH068921NIMH NIH HHS 5R01MH068922NIMH NIH HHS 7R01MH062276NIMH NIH HHS R01 MH062276NIMH NIH HHS R01 MH068881NIMH NIH HHS R01 MH068921NIMH NIH HHS R01 MH068922NIMH NIH HHS U01 MH046276NIMH NIH HHS U01 MH046289NIMH NIH HHS U01 MH046318
6 · The paper itself

Abstract

A genomewide linkage scan was carried out in eight clinical samples of informative schizophrenia families. After all quality control checks, the analysis of 707 European-ancestry families included 1615 affected and 1602 unaffected genotyped individuals, and the analysis of all 807 families included 1900 affected and 1839 unaffected individuals. Multipoint linkage analysis with correction for marker-marker linkage disequilibrium was carried out with 5861 single nucleotide polymorphisms (SNPs; Illumina version 4.0 linkage map). Suggestive evidence for linkage (European families) was observed on chromosomes 8p21, 8q24.1, 9q34 and 12q24.1 in nonparametric and/or parametric analyses. In a logistic regression allele-sharing analysis of linkage allowing for intersite heterogeneity, genomewide significant evidence for linkage was observed on chromosome 10p12. Significant heterogeneity was also observed on chromosome 22q11.1. Evidence for linkage across family sets and analyses was most consistent on chromosome 8p21, with a one-LOD support interval that does not include the candidate gene NRG1, suggesting that one or more other susceptibility loci might exist in the region. In this era of genomewide association and deep resequencing studies, consensus linkage regions deserve continued attention, given that linkage signals can be produced by many types of genomic variation, including any combination of multiple common or rare SNPs or copy number variants in a region.

Indexed as

Genetic LinkageGenetic Predisposition to DiseaseGenome-Wide Association StudyChromosomes, HumanGenome, HumanHumansPedigreePolymorphism, Single NucleotideSchizophrenia

Identifiers

PMID19223858
PMCPMC2714870

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.