Evidence map›Paper›PMID 19222191›Full record

ArticleBiochemistry2009

Helix dipole movement and conformational variability contribute to allosteric GDP release in Galphai subunits.

Anita M Preininger, Michael A Funk, William M Oldham, Scott M Meier, Christopher A Johnston, Suraj Adhikary, Adam J Kimple, David P Siderovski, Heidi E Hamm, Tina M Iverson

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Biochemistry, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

  1. Dipoles affect conformational equilibrium.Journal of photochemistry and photobiology. A, Chemistry · 2025
    Article
  2. Recent advances in computational studies of GPCR-G protein interactions.Advances in protein chemistry and structural biology · 2019
    Review
  3. Article
  4. Article
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  6. Article
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  8. Article
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  10. Article
  11. Review
  12. Article
  13. Article
  14. Interaction of a G protein with an activated receptor opens the interdomain interface in the alpha subunit.Proceedings of the National Academy of Sciences of the United States of America · 2011
    Article
  15. Article
  16. Article
  17. Structural and kinetic modeling of an activating helix switch in the rhodopsin-transducin interface.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Anita M PreiningerDepartment of Pharmacology, Vanderbilt University Medical Center, Nashville, Tennessee 37232-6600, USA.
Michael A Funk
William M Oldham
Scott M Meier
Christopher A Johnston
Suraj Adhikary
Adam J Kimple
David P Siderovski
Heidi E Hamm
Tina M Iverson
Vanderbilt University Medical Center · US

Funding

IMMUNOLOGICAL STUDIES OF VISUAL TRANSDUCTION PATHWAYSR01EY006062 · NEI · VANDERBILT UNIVERSITY · PI HAMM, HEIDI E · 1985 to 2017
$5.6M
Structural Determinants of Heterotrimeric G-protein Nucleotide CyclingR01GM082892 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SIDEROVSKI, DAVID P. · 2008 to 2011
$924k
Transition states in G-protein coupled receptor signalingR21EY018435 · NEI · VANDERBILT UNIVERSITY · PI IVERSON, T M · 2009 to 2010
$415k
Towards small molecule modulators of RGS proteinsF30MH074266 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KIMPLE, ADAM J · 2006 to 2011
$162k
NEI NIH HHS EY06062NEI NIH HHS R01 EY006062NEI NIH HHS R21 EY018435NIGMS NIH HHS GM082892NIGMS NIH HHS R01 GM082892NIMH NIH HHS F30 MH074266
6 · The paper itself

Abstract

Heterotrimeric G proteins (Galphabetagamma) transmit signals from activated G protein-coupled receptors (GPCRs) to downstream effectors through a guanine nucleotide signaling cycle. Numerous studies indicate that the carboxy-terminal alpha5 helix of Galpha subunits participates in Galpha-receptor binding, and previous EPR studies suggest this receptor-mediated interaction induces a rotation and translation of the alpha5 helix of the Galpha subunit [Oldham, W. M., et al. (2006) Nat. Struct. Mol. Biol. 13, 772-777]. On the basis of this result, an engineered disulfide bond was designed to constrain the alpha5 helix of Galpha(i1) into its EPR-measured receptor-associated conformation through the introduction of cysteines at position 56 in the alpha1 helix and position 333 in the alpha5 helix (I56C/Q333C Galpha(i1)). A functional mimetic of the EPR-measured alpha5 helix dipole movement upon receptor association was additionally created by introduction of a positive charge at the amino terminus of this helix, D328R Galpha(i1). Both proteins exhibit a dramatically elevated level of basal nucleotide exchange. The 2.9 A resolution crystal structure of I56C/Q333C Galpha(i1) in complex with GDP-AlF(4)(-) reveals the shift of the alpha5 helix toward the guanine nucleotide binding site that is anticipated by EPR measurements. The structure of the I56C/Q333C Galpha(i1) subunit further revealed altered positions for the switch regions and throughout the Galpha(i1) subunit, accompanied by significantly elevated crystallographic temperature factors. Combined with previous evidence in the literature, the structural analysis supports the critical role of electrostatics of the alpha5 helix dipole and overall conformational variability during nucleotide release.

Indexed as

Allosteric SiteBinding SitesCrystallography, X-RayGTP-Binding Protein alpha Subunits, Gi-GoGuanosine DiphosphateKineticsModels, MolecularProtein ConformationProtein SubunitsSpectrometry, FluorescenceGTP-Binding Protein alpha Subunits, Gi-GoGuanosine DiphosphateProtein Subunits

Identifiers

PMID19222191
PMCPMC2736342
OpenAlexW1984702729

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.