Evidence map›Paper›PMID 19220875›Full record

ArticleVirology journal2009

Intrinsic disorder in Viral Proteins Genome-Linked: experimental and predictive analyses.

Eugénie Hébrard, Yannick Bessin, Thierry Michon, Sonia Longhi, Vladimir N Uversky, François Delalande, Alain Van Dorsselaer, Pedro Romero, Jocelyne Walter, Nathalie Declerck and 1 more

Open access · goldAbstract read
In one paragraph

Article in Virology journal, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
10.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Polerovirus genomic variation.Virus evolution · 2021
    Article
  5. Article
  6. Article
  7. Plant virus evolution under strong drought conditions results in a transition from parasitism to mutualism.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Review
  9. Review
  10. Structural studies of the eIF4E-VPg complex reveal a direct competition for capped RNA: Implications for translation.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  11. Article
  12. Genome-Wide Variation in Potyviruses.Frontiers in plant science · 2019
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 9 institutions in 3 countries.

Eugénie HébrardUMR 1097 Résistance des Plantes aux Bio-agresseurs, IRD, CIRAD, Université de Montpellier II, BP 64501, 34394 Montpellier cedex 5, France. hebrard@mpl.ird.fr
Yannick Bessin
Thierry Michon
Sonia Longhi
Vladimir N Uversky
François Delalande
Alain Van Dorsselaer
Pedro Romero
Jocelyne Walter
Nathalie Declerck
Denis Fargette
Centre de Biologie Structurale · FRUniversité de Bordeaux · FRCentre National de la Recherche Scientifique · FRDiversité, adaptation et développement des plantes · FRFédération française de cardiologie · FRIndiana University – Purdue University Indianapolis · USInstitut de Recherche pour le Développement · FRProtéomique, Réponse Inflammatoire et Spectrométrie de Masse · FRRussian Academy of Sciences · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundVPgs are viral proteins linked to the 5' end of some viral genomes. Interactions between several VPgs and eukaryotic translation initiation factors eIF4Es are critical for plant infection. However, VPgs are not restricted to phytoviruses, being also involved in genome replication and protein translation of several animal viruses. To date, structural data are still limited to small picornaviral VPgs. Recently three phytoviral VPgs were shown to be natively unfolded proteins.

resultsIn this paper, we report the bacterial expression, purification and biochemical characterization of two phytoviral VPgs, namely the VPgs of Rice yellow mottle virus (RYMV, genus Sobemovirus) and Lettuce mosaic virus (LMV, genus Potyvirus). Using far-UV circular dichroism and size exclusion chromatography, we show that RYMV and LMV VPgs are predominantly or partly unstructured in solution, respectively. Using several disorder predictors, we show that both proteins are predicted to possess disordered regions. We next extend theses results to 14 VPgs representative of the viral diversity. Disordered regions were predicted in all VPg sequences whatever the genus and the family.

conclusionBased on these results, we propose that intrinsic disorder is a common feature of VPgs. The functional role of intrinsic disorder is discussed in light of the biological roles of VPgs.

Indexed as

Genome, ViralPlant VirusesPotyvirusRNA VirusesViral Nonstructural ProteinsChromatography, GelCircular DichroismLactucaOryzaPlant DiseasesPredictive Value of TestsProtein FoldingViral Nonstructural Proteins

Identifiers

PMID19220875
PMCPMC2649914
OpenAlexW2096881508

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.