Evidence map›Paper›PMID 19219028›Full record

ArticleNature biotechnology2009

Gene silencing by synthetic U1 adaptors.

Rafal Goraczniak, Mark A Behlke, Samuel I Gunderson

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biotechnology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Life science alliance · 2025
    Article
  5. Tissue distribution pharmacokinetics of intrathecal U1 adaptor oligonucleotide in mice.Current research in pharmacology and drug discovery · 2025
    Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. U1 Adaptors Suppress theMolecular cancer therapeutics · 2017
    Article
  15. Review
  16. The reciprocal regulation between splicing and 3'-end processing.Wiley interdisciplinary reviews. RNA · 2016
    Review
  17. Article
  18. PLEKHA5 as a Biomarker and Potential Mediator of Melanoma Brain Metastasis.Clinical cancer research : an official journal of the American Association for Cancer Research · 2015
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rafal GoraczniakRutgers University, 604 Allison Road, Piscataway, New Jersey 08854, USA.
Mark A Behlke
Samuel I Gunderson

Funding

Regulation of Polyadenylation: the U1A/U1snRNP ParadigmR01GM057286 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI GUNDERSON, SAMUEL I · 1999 to 2007
$2.9M
Regulation of HPV16 late gene expression during keratinocyte differentiationR21CA119934 · NCI · RUTGERS, THE STATE UNIV OF N.J. · PI GUNDERSON, SAMUEL I · 2007 to 2008
$357k
Gene Silencing with U1 Adaptor OligonucleotidesR43GM085863 · NIGMS · INTEGRATED DNA TECHNOLOGIES, INC. · PI BEHLKE, MARK AARON · 2008 to 2009
$270k
NCI NIH HHS CA119934NIGMS NIH HHS GM057286NIGMS NIH HHS R43GM085863
6 · The paper itself

Abstract

We describe a gene silencing method that employs a mechanism of action distinct from those of antisense and RNA interference. U1 Adaptors are bifunctional oligonucleotides with a 'target domain' complementary to a site in the target gene's terminal exon and a 'U1 domain' that binds to the U1 small nuclear RNA component of the U1 small nuclear ribonucleoprotein (U1 snRNP) splicing factor. Tethering of U1 snRNP to the target pre-mRNA inhibits poly(A)-tail addition, causing degradation of that RNA species in the nucleus. U1 Adaptors can inhibit both endogenous and reporter genes in a sequence-specific manner. Comparison of U1 Adaptors with small interfering RNA (siRNA) using a genome-wide microarray analysis indicates that U1 Adaptors have limited off-target effects and no detectable adverse effects on splicing. Further, targeting the same gene either with multiple U1 Adaptors or with a U1 Adaptor and siRNA strongly enhances gene silencing.

Indexed as

Gene Expression RegulationGene SilencingProto-Oncogene Proteins c-rafAnimalsBase SequenceCell LineGenes, ReporterHeLa CellsHumansLuciferasesMolecular Sequence DataRibonucleoprotein, U1 Small NuclearRNA, Small InterferingRNA, Small NuclearSequence Analysis, DNATransfectionLuciferasesProto-Oncogene Proteins c-rafRibonucleoprotein, U1 Small NuclearRNA, Small InterferingRNA, Small NuclearU1 small nuclear RNA

Identifiers

PMID19219028

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.