Evidence map›Paper›PMID 19218534›Full record

ArticleGenome research2009

Global distribution of genomic diversity underscores rich complex history of continental human populations.

Adam Auton, Katarzyna Bryc, Adam R Boyko, Kirk E Lohmueller, John Novembre, Andy Reynolds, Amit Indap, Mark H Wright, Jeremiah D Degenhardt, Ryan N Gutenkunst and 3 more

Abstract read
In one paragraph

Article in Genome research, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 100 papers.

0numbers the graph read from it
0cells of the map it votes in
100citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

100 citing papers in PubMed.

  1. Article
  2. Causal interpretations of family GWAS in the presence of heterogeneous effects.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The impact of identity by descent on fitness and disease in dogs.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

40 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Adam AutonDepartment of Biological Statistics and Computational Biology, Cornell University, Ithaca, NY 14853-2601, USA.
Katarzyna Bryc
Adam R Boyko
Kirk E Lohmueller
John Novembre
Andy Reynolds
Amit Indap
Mark H Wright
Jeremiah D Degenhardt
Ryan N Gutenkunst
Karen S King
Matthew R Nelson
Carlos D Bustamante

Funding

Association Mapping in Structured PopulationsR01GM083606 · NIGMS · STANFORD UNIVERSITY · PI BUSTAMANTE, CARLOS DANIEL · 2007 to 2010
$1.3M
Dimension Reduction Approaches for Genome-wide Association TestingU01HL084706 · NHLBI · CORNELL UNIVERSITY · PI CLARK, ANDREW G · 2006 to 2008
$921k
NHLBI NIH HHS 1 U01 HL084706NHLBI NIH HHS U01 HL084706NIGMS NIH HHS R01 GM083606
6 · The paper itself

Abstract

Characterizing patterns of genetic variation within and among human populations is important for understanding human evolutionary history and for careful design of medical genetic studies. Here, we analyze patterns of variation across 443,434 single nucleotide polymorphisms (SNPs) genotyped in 3845 individuals from four continental regions. This unique resource allows us to illuminate patterns of diversity in previously under-studied populations at the genome-wide scale including Latin America, South Asia, and Southern Europe. Key insights afforded by our analysis include quantifying the degree of admixture in a large collection of individuals from Guadalajara, Mexico; identifying language and geography as key determinants of population structure within India; and elucidating a north-south gradient in haplotype diversity within Europe. We also present a novel method for identifying long-range tracts of homozygosity indicative of recent common ancestry. Application of our approach suggests great variation within and among populations in the extent of homozygosity, suggesting both demographic history (such as population bottlenecks) and recent ancestry events (such as consanguinity) play an important role in patterning variation in large modern human populations.

Indexed as

Genetics, PopulationGenetic VariationGenome, HumanAsiaEuropeGenotypeHaplotypesHomozygoteHumansLatin AmericaPolymorphism, Single NucleotidePrincipal Component Analysis

Identifiers

PMID19218534
PMCPMC2675968

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.