Evidence map›Paper›PMID 19218423›Full record

ArticleEukaryotic cell2009

Efficient gene replacements in Toxoplasma gondii strains deficient for nonhomologous end joining.

Barbara A Fox, Jessica G Ristuccia, Jason P Gigley, David J Bzik

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 185 papers.

0numbers the graph read from it
0cells of the map it votes in
185citing papers in PubMed
10.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

185 citing papers in PubMed, 282 citations in OpenAlex.

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  10. Role ofInternational journal of molecular sciences · 2025
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  15. Construction and biological function ofZhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2024
    Article
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  19. Massive invasion of organellar DNA drives nuclear genome evolution inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  20. Review

125 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Barbara A FoxDepartment of Microbiology and Immunology, Dartmouth Medical School, Lebanon, NH 03756, USA.
Jessica G Ristuccia
Jason P Gigley
David J Bzik

Funding

T GONDII--PYRIMIDINE SYNTHESIS AS A CHEMOTHERAPY TARGETR01AI041930 · NIAID · DARTMOUTH COLLEGE · PI BZIK, DAVID J · 1997 to 2013
$4.2M
Regulated virulence and cyst maturation in Toxoplasma gondiiR21AI075931 · NIAID · DARTMOUTH COLLEGE · PI BZIK, DAVID J · 2008 to 2009
$440k
Enhanced homologous recombination in Toxoplasma gondiiR21AI073142 · NIAID · DARTMOUTH COLLEGE · PI BZIK, DAVID J · 2007 to 2008
$435k
NIAID NIH HHS AI073142NIAID NIH HHS AI075931NIAID NIH HHS AI41930NIAID NIH HHS R01 AI041930NIAID NIH HHS R21 AI073142NIAID NIH HHS R21 AI075931
6 · The paper itself

Abstract

A high frequency of nonhomologous recombination has hampered gene targeting approaches in the model apicomplexan parasite Toxoplasma gondii. To address whether the nonhomologous end-joining (NHEJ) DNA repair pathway could be disrupted in this obligate intracellular parasite, putative KU proteins were identified and a predicted KU80 gene was deleted. The efficiency of gene targeting via double-crossover homologous recombination at several genetic loci was found to be greater than 97% of the total transformants in KU80 knockouts. Gene replacement efficiency was markedly increased (300- to 400-fold) in KU80 knockouts compared to wild-type strains. Target DNA flanks of only approximately 500 bp were found to be sufficient for efficient gene replacements in KU80 knockouts. KU80 knockouts stably retained a normal growth rate in vitro and the high virulence phenotype of type I strains but exhibited an increased sensitivity to double-strand DNA breaks induced by treatment with phleomycin or gamma-irradiation. Collectively, these results revealed that a significant KU-dependent NHEJ DNA repair pathway is present in Toxoplasma gondii. Integration essentially occurs only at the homologous targeted sites in the KU80 knockout background, making this genetic background an efficient host for gene targeting to speed postgenome functional analysis and genetic dissection of parasite biology.

Indexed as

DNA RepairGene DeletionAnimalsAntigens, NuclearDNA-Binding ProteinsGene Knockout TechniquesKu AutoantigenProtozoan ProteinsRecombination, GeneticToxoplasmaAntigens, NuclearDNA-Binding ProteinsKu AutoantigenProtozoan Proteins

Identifiers

PMID19218423
PMCPMC2669201
OpenAlexW2100075651

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.