Evidence map›Paper›PMID 19218208›Full record

ArticleThe Journal of general virology2009

Identification of species-specific and cross-reactive epitopes in human polyomavirus capsids using monoclonal antibodies.

Parmjeet Randhawa, Raphael Viscidi, Joseph J Carter, Denise A Galloway, Tim D Culp, Cathy Huang, Bala Ramaswami, Neil D Christensen

Abstract read
In one paragraph

Article in The Journal of general virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Exposing the Molecular Machinery of BK Polyomavirus.Structure (London, England : 1993) · 2016
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. A cornucopia of human polyomaviruses.Nature reviews. Microbiology · 2013
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 1 country.

Parmjeet RandhawaDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Raphael ViscidiDepartment of Pediatrics, Johns Hopkins University, Baltimore, MD, USA.
Joseph J CarterFred Hutchinson Cancer Research Center, University of Washington, Seattle, WA, USA.
Denise A GallowayFred Hutchinson Cancer Research Center, University of Washington, Seattle, WA, USA.
Tim D CulpDepartment of Pathology, Jake Gittlen Cancer Research Foundation, Pennsylvania State University, Hershey, USA.
Cathy HuangDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Bala RamaswamiDepartment of Pathology, University of Pittsburgh, Pittsburgh, PA 15213, USA.
Neil D ChristensenDepartment of Pathology, Jake Gittlen Cancer Research Foundation, Pennsylvania State University, Hershey, USA.
University of Pittsburgh · USCancer Research Foundation · USFred Hutch Cancer Center · USJohns Hopkins University · USPennsylvania State University · USUniversity of Washington · US

Funding

Polyomavirus Infection after Kidney TransplantationR01AI051227 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RANDHAWA, PARMJEET S · 2003 to 2011
$2.3M
Immune Response to Polyomavirus InfectionR01AI063360 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RANDHAWA, PARMJEET S · 2006 to 2010
$2.0M
Immune Response to Polyomavirus InfectionR56AI063360 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI RANDHAWA, PARMJEET S, VISCIDI, RAPHAEL PAUL · 2012 to 2012
$379k
NIAID NIH HHS AI 63360NIAID NIH HHS N01 AI030044NIAID NIH HHS N0-1 AI 30044NIAID NIH HHS R01 AI051227NIAID NIH HHS R01 AI063360NIAID NIH HHS R01 AI 51227NIAID NIH HHS R56 AI063360
6 · The paper itself

Abstract

The human antibody response to polyomavirus capsid proteins is not well characterized. Recombinant BK virus (BKV), JC virus (JCV) and simian virus 40 (SV40) virus-like particles (VLP) were produced in a baculovirus system, and mouse monoclonal antibodies (mAbs) to these proteins were generated using standard methods. Nine of 12 BKV mAbs showed neutralizing activity. The non-neutralizing antibodies also bound BKV pseudocapsids in an ELISA binding assay. Most antibodies recognized conformational species-specific epitopes, but several exceptions were found: (i) BKV mAb BK-F11 cross-reacted with a linear buried epitope common to both JCV and SV40 pseudocapsids, (ii) two of six JCV antibodies (JC-6.7 and JC-7.9) and two of 13 SV40 antibodies (VP1-H2 and VP1-I2) recognized linear buried epitopes common to all three viruses and (iii) SV40 antibody VP1-E5 recognized a linear surface epitope on JCV pseudocapsids.

Indexed as

AnimalsAntibodies, MonoclonalAntibodies, ViralBaculoviridaeBK VirusCapsidCapsid ProteinsCross ReactionsEpitope MappingEpitopesHumansJC VirusMiceNeutralization TestsPolyomavirusSimian virus 40Antibodies, MonoclonalAntibodies, ViralCapsid ProteinsEpitopes

Identifiers

PMID19218208
PMCPMC3075566
OpenAlexW2085675226

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.