Evidence map›Paper›PMID 19218196›Full record

ArticleAmerican journal of respiratory and critical care medicine2009

Gene expression profiling identifies MMP-12 and ADAMDEC1 as potential pathogenic mediators of pulmonary sarcoidosis.

Elliott D Crouser, Daniel A Culver, Kenneth S Knox, Mark W Julian, Guohong Shao, Susamma Abraham, Sandya Liyanarachchi, Jennifer E Macre, Mark D Wewers, Mikhail A Gavrilin and 3 more

Open access · greenAbstract read
In one paragraph

Article in American journal of respiratory and critical care medicine, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 1 synthesis or guideline pooled it, 156 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Trial
  4. Trial
  5. MMP12 induces fibrogenic macrophage differentiation to drive granuloma-associated cardiac fibrosis.American journal of respiratory and critical care medicine · 2026
    Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Overview of multi-omics approaches for pulmonary sarcoidosis.EC pulmonology and respiratory medicine · 2025
    Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Elliott D CrouserDivision of Pulmonary, Allergy, Critical Care, and Sleep Medicine, The Dorothy M. Davis Heart and Lung Research Institute, Columbus, Ohio 43210-1252, USA. Elliott.Crouser@osumc.edu
Daniel A Culver
Kenneth S Knox
Mark W Julian
Guohong Shao
Susamma Abraham
Sandya Liyanarachchi
Jennifer E Macre
Mark D Wewers
Mikhail A Gavrilin
Patrick Ross
Abbas Abbas
Charis Eng
St. Francis Sleep, Allergy, and Lung Institute · USCleveland Clinic · USThe Ohio State University Wexner Medical Center · USRichard L. Roudebush VA Medical Center · USThe Ohio State University · US

Funding

Pulmonary CD4+ T-Cell Repopulation in Immune Reconstituion SyndromeR01HL083468 · NHLBI · UNIVERSITY OF ARIZONA · PI KNOX, KENNETH S · 2005 to 2009
$1.7M
Matrix Metalloproteinases and PPAR Gamma in SarcoidosisK23HL081538 · NHLBI · CLEVELAND CLINIC LERNER COM-CWRU · PI CULVER, DANIEL A · 2005 to 2009
$645k
Stromal Gene Expression During Pulmonary SarcoidosisR21HL077466 · NHLBI · OHIO STATE UNIVERSITY · PI CROUSER, ELLIOTT D · 2004 to 2005
$411k
NHLBI NIH HHS HL077466NHLBI NIH HHS HL081538NHLBI NIH HHS HL083468
6 · The paper itself

Abstract

rationaleLittle is known about the genetic regulation of granulomatous inflammation in sarcoidosis.

objectivesTo determine if tissue gene array analysis would identify novel genes engaged in inflammation and lung remodeling in patients with sarcoidosis.

methodsGene expression analysis was performed on tissues obtained from patients with sarcoidosis at the time of diagnosis (untreated) (n = 6) compared with normal lung tissue (n = 6). Expression of select genes was further confirmed in lung tissue from a second series of patients with sarcoidosis and disease-free control subjects (n = 11 per group) by semi-quantitative RT-PCR. Interactive gene networks were identified in patients with sarcoidosis using Ingenuity Pathway Analysis (Ingenuity Systems, Inc., Redwood, CA) software. The expression of proteins corresponding to selected overexpressed genes was determined using fluorokine multiplex analysis, and immunohistochemistry. Selected genes and proteins were then analyzed in bronchoalveolar lavage fluid in an independent series of patients with sarcoidosis (n = 36) and control subjects (n = 12). MEASUREMENTS AND MAIN

resultsA gene network engaged in Th1-type responses was most significantly overexpressed in the sarcoidosis lung tissues, including genes not previously reported in the context of sarcoidosis (e.g., IL-7). MMP-12 and ADAMDEC1 transcripts were most highly expressed (> 25-fold) in sarcoidosis lung tissues, corresponding with increased protein expression by immunohistochemistry. MMP-12 and ADAMDEC1 gene and protein expression were increased in bronchoalveolar lavage samples from patients with sarcoidosis, correlating with disease severity.

conclusionsTissue gene expression analyses provide novel insights into the pathogenesis of pulmonary sarcoidosis. MMP-12 and ADAMDEC1 emerge as likely mediators of lung damage and/or remodeling and may serve as markers of disease activity.

Indexed as

ADAM ProteinsAdultAge FactorsBronchoalveolar Lavage FluidCase-Control StudiesCytokinesFemaleGene Expression ProfilingGene Expression RegulationGranulomaHumansMaleMatrix Metalloproteinase 12MetalloendopeptidasesMicroarray AnalysisMiddle AgedADAM ProteinsCytokinesdecysinMatrix Metalloproteinase 12Metalloendopeptidases

Identifiers

PMID19218196
PMCPMC2684019
OpenAlexW2091107271

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.