Evidence map›Paper›PMID 19217396›Full record

ArticleStructure (London, England : 1993)2009

Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody.

Konstantin V Korotkov, Els Pardon, Jan Steyaert, Wim G J Hol

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 106 papers.

0numbers the graph read from it
0cells of the map it votes in
106citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

106 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Affinity-stability trade-off mechanism of residue 35 in framework region 2 of VProtein science : a publication of the Protein Society · 2025
    Article
  6. Article
  7. Article
  8. Nanobody-aided crystallization of the transcription regulator PaaR2 from Escherichia coli O157:H7.Acta crystallographica. Section F, Structural biology communications · 2021
    Article
  9. Article
  10. Article
  11. Article
  12. Bacterial secretins: Mechanisms of assembly and membrane targeting.Protein science : a publication of the Protein Society · 2020
    Review
  13. Article
  14. Review
  15. Bacteria-Killing Type IV Secretion Systems.Frontiers in microbiology · 2019
    Review
  16. Characterization and structure determination of a llama-derived nanobody targeting the J-base binding protein 1.Acta crystallographica. Section F, Structural biology communications · 2018
    Article
  17. Article
  18. Article
  19. Article
  20. Article

46 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Konstantin V KorotkovDepartment of Biochemistry, Biomolecular Structure Center, University of Washington, Seattle, WA 98195, USA.
Els Pardon
Jan Steyaert
Wim G J Hol

Funding

STRUCTURAL STUDY OF HEAT-LABILE ENTEROTOXINR01AI034501 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 1993 to 2013
$5.4M
Structural Biology of Type II Protein Secretion by Bacterial CellsR56AI034501 · NIAID · UNIVERSITY OF WASHINGTON · PI HOL, WILHELMUS G. J. · 2015 to 2015
$490k
NIAID NIH HHS AI34501NIAID NIH HHS R01 AI034501NIAID NIH HHS R56 AI034501
6 · The paper itself

Abstract

Secretins are among the largest bacterial outer membrane proteins known. Here we report the crystal structure of the periplasmic N-terminal domain of GspD (peri-GspD) from the type 2 secretion system (T2SS) secretin in complex with a nanobody, the VHH domain of a heavy-chain camelid antibody. Two different crystal forms contained the same compact peri-GspD:nanobody heterotetramer. The nanobody contacts peri-GspD mainly via CDR3 and framework residues. The peri-GspD structure reveals three subdomains, with the second and third subdomains exhibiting the KH fold which also occurs in ring-forming proteins of the type 3 secretion system. The first subdomain of GspD is related to domains in phage tail proteins and outer membrane TonB-dependent receptors. A dodecameric peri-GspD model is proposed in which a solvent-accessible beta strand of the first subdomain interacts with secreted proteins and/or T2SS partner proteins by beta strand complementation.

Indexed as

Amino Acid SequenceCrystallography, X-RayEnterotoxigenic Escherichia coliEscherichia coli ProteinsImmunoglobulin Heavy ChainsModels, BiologicalModels, MolecularMolecular Sequence DataPorinsProtein BindingProtein MultimerizationProtein Structure, QuaternaryProtein Structure, SecondaryProtein Structure, TertiarySecretinSequence Homology, Amino AcidEscherichia coli ProteinsGspD protein, E coliImmunoglobulin Heavy ChainsPorinsSecretin

Identifiers

PMID19217396
PMCPMC2662362

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.