Evidence map›Paper›PMID 19217395›Full record

ArticleStructure (London, England : 1993)2009

Gating mechanism of the influenza A M2 channel revealed by 1D and 2D IR spectroscopies.

Joshua Manor, Prabuddha Mukherjee, Yu-Shan Lin, Hadas Leonov, James L Skinner, Martin T Zanni, Isaiah T Arkin

Abstract read
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. AIM: A Mapping Program for Infrared Spectroscopy of Proteins.Journal of chemical theory and computation · 2022
    Article
  2. Article
  3. Article
  4. Quantitative Analysis of Multiplex H-Bonds.Journal of the American Chemical Society · 2020
    Article
  5. Review
  6. Review
  7. Review
  8. Review
  9. Computing infrared spectra of proteins using the exciton model.Journal of computational chemistry · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. How Sensitive is the Amide I Vibration of the Polypeptide Backbone to Electric Fields?Chemphyschem : a European journal of chemical physics and physical chemistry · 2015
    Article
  15. Temporal evolution of helix hydration in a light-gated ion channel correlates with ion conductance.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  16. Article
  17. Theoretical Sum Frequency Generation Spectroscopy of Peptides.The journal of physical chemistry. B · 2015
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Joshua ManorThe Alexander Silberman Institute of Life Sciences, Department of Biological Chemistry, The Hebrew University of Jerusalem, Edmund J. Safra Campus, Givat-Ram, Jerusalem 91904, Israel.
Prabuddha Mukherjee
Yu-Shan Lin
Hadas Leonov
James L Skinner
Martin T Zanni
Isaiah T Arkin

Funding

1 and 2D IR structural analyses of Influenza M2 channelR21AI064797 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI ZANNI, MARTIN T · 2005 to 2006
$492k
NIAID NIH HHS R21 AI064797NIAID NIH HHS R21AI064797
6 · The paper itself

Abstract

The pH-controlled M2 protein from influenza A is a critical component of the virus and serves as a target for the aminoadamantane antiflu agents that block its H+ channel activity. To better understand its H+ gating mechanism, we investigated M2 in lipid bilayers with a new combination of IR spectroscopies and theory. Linear Fourier transform infrared (FTIR) spectroscopy was used to measure the precise orientation of the backbone carbonyl groups, and 2D infrared (IR) spectroscopy was used to identify channel-lining residues. At low pH (open state), our results match previously published solid-state NMR and X-ray structures remarkably well. However, at neutral pH when the channel is closed, our measurements indicate that a large conformational change occurs that is consistent with the transmembrane alpha-helices rotating by one amino acid register--a structural rearrangement not previously observed. The combination of simulations and isotope-labeled FTIR and 2D IR spectroscopies provides a noninvasive means of interrogating the structures of membrane proteins in general and ion channels in particular.

Indexed as

Ion Channel GatingComputational BiologyComputer SimulationHydrogen-Ion ConcentrationModels, BiologicalModels, MolecularProtein ConformationProtonsRotationSpectrophotometry, InfraredViral Matrix ProteinsViroporin ProteinsM2 protein, Influenza A virusProtonsViral Matrix ProteinsViroporin Proteins

Identifiers

PMID19217395
PMCPMC2820372

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.