Evidence map›Paper›PMID 19217386›Full record

ArticleStructure (London, England : 1993)2009

Outcome of a workshop on applications of protein models in biomedical research.

Torsten Schwede, Andrej Sali, Barry Honig, Michael Levitt, Helen M Berman, David Jones, Steven E Brenner, Stephen K Burley, Rhiju Das, Nikolay V Dokholyan and 22 more

Open access · bronzeAbstract readConference Proceedings
In one paragraph

Article in Structure (London, England : 1993), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 94 papers.

0numbers the graph read from it
0cells of the map it votes in
94citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

94 citing papers in PubMed, 153 citations in OpenAlex.

  1. Review
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34 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 20 institutions in 6 countries.

Torsten SchwedeSwiss Institute of Bioinformatics, Biozentrum, University of Basel, Klingelbergstrasse 50-70, CH-4056 Basel, Switzerland. torsten.schwede@unibas.ch
Andrej Sali
Barry Honig
Michael Levitt
Helen M Berman
David Jones
Steven E Brenner
Stephen K Burley
Rhiju Das
Nikolay V Dokholyan
Roland L Dunbrack
Krzysztof Fidelis
Andras Fiser
Adam Godzik
Yuanpeng Janet Huang
Christine Humblet
Matthew P Jacobson
Andrzej Joachimiak
Stanley R Krystek
Tanja Kortemme
Andriy Kryshtafovych
Gaetano T Montelione
John Moult
Diana Murray
Roberto Sanchez
Tobin R Sosnick
Daron M Standley
Terry Stouch
Sandor Vajda
Max Vasquez
John D Westbrook
Ian A Wilson
Rutgers, The State University of New Jersey · USUniversity of California, Davis · USUniversity of California, San Francisco · USAlbert Einstein College of Medicine · USArgonne National Laboratory · USBiotechnology Institute · USBoston University · USBristol-Myers Squibb (Germany) · DEColumbia University · USEloxx Pharmaceuticals (United States) · USFox Chase Cancer Center · USHoward Hughes Medical Institute · USIcahn School of Medicine at Mount Sinai · USQB3 · USSanford Burnham Prebys Medical Discovery Institute · USScripps Research Institute · USSIB Swiss Institute of Bioinformatics · CHStanford University · USThe University of Osaka · JPUCL Australia · AU

Funding

Sub-project 9U54GM074958 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI KENNEDY, MICHAEL ALLEN · 2005 to 2009
$56.6M
The Midwest Center for Structural GenomicsU54GM074942 · NIGMS · UNIVERSITY OF CHICAGO · PI JOACHIMIAK, ANDRZEJ · 2005 to 2009
$51.0M
Platform for Physics-Based Methods in CASP (Comp. Rev. to LM007085)P41LM007085 · NLM · UNIVERSITY OF CALIFORNIA DAVIS · PI FIDELIS, KRZYSZTOF A · 2001 to 2011
$6.5M
Accurate Molecular Modeling in Structural GenomicsR01GM063817 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2001 to 2016
$5.0M
Computational mapping of proteins for the binding of ligandsR01GM064700 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI VAJDA, SANDOR · 2003 to 2015
$4.3M
A MULTISTAGE APPROACH TO PROTEIN-PROTEIN DOCKINGR01GM061867 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI VAJDA, SANDOR · 2000 to 2016
$4.0M
New Methods for High-Resolution Comparative ModelingP20GM076222 · NIGMS · RESEARCH INST OF FOX CHASE CAN CTR · PI DUNBRACK, ROLAND L · 2006 to 2009
$3.3M
Protein Structure Refinement Using a Novel MovesetR01GM081642 · NIGMS · UNIVERSITY OF CHICAGO · PI SOSNICK, TOBIN R · 2007 to 2009
$968k
NIGMS NIH HHS P20 GM076222NIGMS NIH HHS P20 GM076222-02S1NIGMS NIH HHS R01 GM061867NIGMS NIH HHS R01 GM063817NIGMS NIH HHS R01 GM064700NIGMS NIH HHS R01 GM081642NIGMS NIH HHS U54 GM074942NIGMS NIH HHS U54 GM074958NIGMS NIH HHS U54 GM074958-04S2NLM NIH HHS P41 LM007085
6 · The paper itself

Abstract

We describe the proceedings and conclusions from the "Workshop on Applications of Protein Models in Biomedical Research" (the Workshop) that was held at the University of California, San Francisco on 11 and 12 July, 2008. At the Workshop, international scientists involved with structure modeling explored (i) how models are currently used in biomedical research, (ii) the requirements and challenges for different applications, and (iii) how the interaction between the computational and experimental research communities could be strengthened to advance the field.

Indexed as

Models, MolecularAnimalsBiomedical ResearchChemistry, PharmaceuticalDatabases, ProteinDrug DiscoveryEnzymesHealth Planning GuidelinesHumansProtein ConformationProtein EngineeringProtein Interaction MappingProteinsSoftwareEnzymesProteins

Identifiers

PMID19217386
PMCPMC2739730
OpenAlexW2128484254

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.