Evidence map›Paper›PMID 19214242›Full record

ArticleInternational journal of medical sciences2009

Transcriptome analysis of murine thymocytes reveals age-associated changes in thymic gene expression.

Ana Lustig, Arnell Carter, Dorothy Bertak, Divya Enika, Bolormaa Vandanmagsar, William Wood, Kevin G Becker, Ashani T Weeraratna, Dennis D Taub

Open access · goldAbstract read
In one paragraph

Article in International journal of medical sciences, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it, 31 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Age-dependent expression of ion channel genes in rat.The Korean journal of physiology & pharmacology : official journal of the Korean Physiological Society and the Korean Society of Pharmacology · 2023
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ana LustigLaboratory of Immunology, National Institute on Aging-Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Arnell Carter
Dorothy Bertak
Divya Enika
Bolormaa Vandanmagsar
William Wood
Kevin G Becker
Ashani T Weeraratna
Dennis D Taub
National Institute on Aging · USInstitute on Aging · USNational Institutes of Health · US

Funding

Analysis of complex biological systems by microarray based gene expressionZICAG000616 · NIA · NATIONAL INSTITUTE ON AGING · PI DE, SUPRIYO · 2009 to 2025
$15.5M
Mechanisms that Regulate Thymic Involution and Age-Associated Changes in T-CellsZIAAG000766 · NIA · NATIONAL INSTITUTE ON AGING · PI SEN, RANJAN · 2009 to 2013
$1.5M
Characterization of Immune Alterations Associated with the Aging ProcessZIAAG000104 · NIA · NATIONAL INSTITUTE ON AGING · PI EGAN, JOSEPHINE · 2009 to 2016
$1.4M
Analysis of complex biological systems by microarray based gene expressionZ01AG000616 · NIA · NATIONAL INSTITUTE ON AGING · PI BECKER, KEVIN · 2008 to 2008
$886k
Thymic Involution And Age-associated Changes In T CellsZ01AG000766 · NIA · NATIONAL INSTITUTE ON AGING · PI TAUB, DENNIS D. · 2001 to 2008
$799k
Immune Alterations Associated with AgingZ01AG000104 · NIA · AGING · PI TAUB, DENNIS D. · 1985 to 2004
–
Intramural NIH HHS
6 · The paper itself

Abstract

The decline in adaptive immunity, naïve T-cell output and a contraction in the peripheral T cell receptor (TCR) repertoire with age are largely attributable to thymic involution and the loss of critical cytokines and hormones within the thymic microenvironment. To assess the molecular changes associated with this loss of thymic function, we used cDNA microarray analyses to examine the transcriptomes of thymocytes from mice of various ages ranging from very young (1 month) to very old (24 months). Genes associated with various biological and molecular processes including oxidative phosphorylation, T- and B- cell receptor signaling and antigen presentation were observed to significantly change with thymocyte age. These include several immunoglobulin chains, chemokine and ribosomal proteins, annexin A2, vav 1 and several S100 signaling proteins. The increased expression of immunoglobulin genes in aged thymocytes could be attributed to the thymic B cells which were found to be actively producing IgG and IgM antibodies. Upon further examination, we found that purified thymic T cells derived from aged but not young thymi also exhibited IgM on their cell surface suggesting the possible presence of auto-antibodies on the surface thymocytes with advancing age. These studies provide valuable insight into the cellular and molecular mechanisms associated with thymic aging.

Indexed as

Gene Expression ProfilingAgingAnimalsAntigen PresentationAutoantibodiesB-LymphocytesCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesDown-RegulationGene Expression RegulationImmunoglobulin MImmunoglobulinsInternetIntracellular Signaling Peptides and ProteinsMiceMice, Inbred C57BLAutoantibodiesImmunoglobulin MImmunoglobulinsIntracellular Signaling Peptides and ProteinsPurinesUbiquinoneAGEMAPagingcaloric restrictioninvolutionmicroarraythymocytesthymus

Identifiers

PMID19214242
PMCPMC2640475
OpenAlexW2152691999

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.