Evidence map›Paper›PMID 19213880›Full record

ArticleScience (New York, N.Y.)2009

Sequencing and analyses of all known human rhinovirus genomes reveal structure and evolution.

Ann C Palmenberg, David Spiro, Ryan Kuzmickas, Shiliang Wang, Appolinaire Djikeng, Jennifer A Rathe, Claire M Fraser-Liggett, Stephen B Liggett

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 269 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
269citing papers in PubMed, 2 pooled it
24.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

269 citing papers in PubMed, 2 syntheses or guidelines pooled it, 479 citations in OpenAlex.

  1. Pooled it
  2. Vaccines for the common cold.The Cochrane database of systematic reviews · 2017
    Pooled it
  3. Trial
  4. Trial
  5. Unique nasal cell states induced by common pediatric respiratory viruses.bioRxiv : the preprint server for biology · 2026
    Article
  6. Article
  7. Article
  8. The rhinovirus puzzle: Linking virus and host factors to childhood asthma.The Journal of allergy and clinical immunology · 2026
    Review
  9. Recovery of an 18bioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Journal of virology · 2025
    Article
  14. Article
  15. Review
  16. Review
  17. In Vitro Model to Test Therapeutic Agents Against Rhinovirus Infection.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  18. Detection of Rhinovirus in Clinical Samples by PCR.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  19. Quantification of Infectious Rhinovirus A and B Serotypes by Plaque Assay.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  20. Article

209 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Ann C PalmenbergInstitute for Molecular Virology, University of Wisconsin, Madison, WI 53706, USA.
David Spiro
Ryan Kuzmickas
Shiliang Wang
Appolinaire Djikeng
Jennifer A Rathe
Claire M Fraser-Liggett
Stephen B Liggett
J. Craig Venter Institute · USUniversity of Maryland, Baltimore · USUniversity of Wisconsin–Madison · US

Funding

RV-Mediated Mechanisms of Neutrophil Motility /InflammatU19AI070503 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI BERTICS, PAUL JOHN · 2006 to 2010
$6.8M
Lung HRV: G-Protein Coupled Signaling Interactions in AsthmaR01HL091490 · NHLBI · UNIVERSITY OF SOUTH FLORIDA · PI LIGGETT, STEPHEN B · 2010 to 2013
$1.5M
NHLBI NIH HHS R01 HL091490NIAID NIH HHS U19 AI070503NIAID NIH HHS U19-AI070503
6 · The paper itself

Abstract

Infection by human rhinovirus (HRV) is a major cause of upper and lower respiratory tract disease worldwide and displays considerable phenotypic variation. We examined diversity by completing the genome sequences for all known serotypes (n = 99). Superimposition of capsid crystal structure and optimal-energy RNA configurations established alignments and phylogeny. These revealed conserved motifs; clade-specific diversity, including a potential newly identified species (HRV-D); mutations in field isolates; and recombination. In analogy with poliovirus, a hypervariable 5' untranslated region tract may affect virulence. A configuration consistent with nonscanning internal ribosome entry was found in all HRVs and may account for rapid translation. The data density from complete sequences of the reference HRVs provided high resolution for this degree of modeling and serves as a platform for full genome-based epidemiologic studies and antiviral or vaccine development.

Indexed as

Evolution, MolecularGenome, Viral3' Untranslated Regions5' Untranslated RegionsBase CompositionBase SequenceCodon, TerminatorHumansMolecular Sequence DataMutationNucleic Acid ConformationOpen Reading FramesPhylogenyPicornaviridae InfectionsPolyproteinsRecombination, Genetic3' Untranslated Regions5' Untranslated RegionsCodon, TerminatorPolyproteinsRNA, ViralViral Proteins

Identifiers

PMID19213880
PMCPMC3923423
OpenAlexW2083623188

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.