ArticlePloS one2009
Phylogeny in aid of the present and novel microbial lineages: diversity in Bacillus.
Article in PloS one, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
55 citing papers in PubMed.
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- The catE gene of Bacillus licheniformis M2-7 is essential for growth in benzopyrene, and its expression is regulated by the Csr system.World journal of microbiology & biotechnology · 2023Article
- Differential Multi-cellularity Is Required for the Adaptation forIndian journal of microbiology · 2021Article
- Relationships Between the Microbial Composition and the Geochemistry and Mineralogy of the Cobalt-Bearing Legacy Mine Tailings in Northeastern Ontario.Frontiers in microbiology · 2021Article
- The Significance ofMicroorganisms · 2020Review
- Article
- Mapping Microbial Capacities for Bioremediation: Genes to Genomics.Indian journal of microbiology · 2020Review
- Composite genome sequence of Bacillus clausii, a probiotic commercially available as EnterogerminaBMC microbiology · 2019Article
- Aligning Microbial Biodiversity for Valorization of Biowastes: Conception to Perception.Indian journal of microbiology · 2019Review
- Spoilage Bacteria Identification and Food Safety Risk Assessment of Whole Soybean Curd.Indian journal of microbiology · 2019Article
- Bio-hydrogen production by co-digestion of domestic wastewater and biodiesel industry effluent.PloS one · 2018Article
- The LspC3-41I restriction-modification system is the major determinant for genetic manipulations of Lysinibacillus sphaericus C3-41.BMC microbiology · 2017Article
- An In Silico Approach for Identification of the Pathogenic Species, Helicobacter pylori and Its Relatives.Indian journal of microbiology · 2016Article
- Comparative Genomics Reveals Biomarkers to Identify Lactobacillus Species.Indian journal of microbiology · 2016Article
- Complete Genome Sequence of a Novel Bacillus sp. VT 712 Strain Isolated from the Duodenum of a Patient with Intestinal Cancer.Genome announcements · 2016Article
- Harnessing dark fermentative hydrogen from pretreated mixture of food waste and sewage sludge under sequencing batch mode.Environmental science and pollution research international · 2016Article
- Searching Biomarkers in the Sequenced Genomes of Staphylococcus for their Rapid Identification.Indian journal of microbiology · 2016Article
Corrections and comments
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Authors and funding
4 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Bacillus represents microbes of high economic, medical and biodefense importance. Bacillus strain identification based on 16S rRNA sequence analyses is invariably limited to species level. Secondly, certain discrepancies exist in the segregation of Bacillus subtilis strains. In the RDP/NCBI databases, out of a total of 2611 individual 16S rDNA sequences belonging to the 175 different species of the genus Bacillus, only 1586 have been identified up to species level. 16S rRNA sequences of Bacillus anthracis (153 strains), B. cereus (211 strains), B. thuringiensis (108 strains), B. subtilis (271 strains), B. licheniformis (131 strains), B. pumilus (83 strains), B. megaterium (47 strains), B. sphaericus (42 strains), B. clausii (39 strains) and B. halodurans (36 strains) were considered for generating species-specific framework and probes as tools for their rapid identification. Phylogenetic segregation of 1121, 16S rDNA sequences of 10 different Bacillus species in to 89 clusters enabled us to develop a phylogenetic frame work of 34 representative sequences. Using this phylogenetic framework, 305 out of 1025, 16S rDNA sequences presently classified as Bacillus sp. could be identified up to species level. This identification was supported by 20 to 30 nucleotides long signature sequences and in silico restriction enzyme analysis specific to the 10 Bacillus species. This integrated approach resulted in identifying around 30% of Bacillus sp. up to species level and revealed that B. subtilis strains can be segregated into two phylogenetically distinct groups, such that one of them may be renamed.
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