Evidence map›Paper›PMID 19211769›Full record

ArticleJournal of virology2009

The adenoviral E1B 55-kilodalton protein controls expression of immune response genes but not p53-dependent transcription.

Daniel L Miller, Brenden Rickards, Michael Mashiba, Wenying Huang, S J Flint

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  10. E4orf1 SuppressesVaccines · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Long story short: p53 mediates innate immunity.Biochimica et biophysica acta · 2016
    Review
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Daniel L MillerDepartment of Molecular Biology, Princeton University, Princeton, NJ 08544-1014, USA.
Brenden Rickards
Michael Mashiba
Wenying Huang
S J Flint
Princeton University · US

Funding

Spatial Patterning During DevelopmentP50GM071508 · NIGMS · PRINCETON UNIVERSITY · PI POWELL, SUSAN M · 2004 to 2013
$30.6M
Molecular Functions of the Adenoviral E1B 55 kDa ProteinR01AI058172 · NIAID · PRINCETON UNIVERSITY · PI FLINT, SARAH JANE · 2004 to 2008
$1.9M
NIAID NIH HHS R01 AI058172NIAID NIH HHS R01AI1058172NIGMS NIH HHS P0GM071508NIGMS NIH HHS P50 GM071508
6 · The paper itself

Abstract

The human adenovirus type 5 (Ad5) E1B 55-kDa protein modulates several cellular processes, including activation of the tumor suppressor p53. Binding of the E1B protein to the activation domain of p53 inhibits p53-dependent transcription. This activity has been correlated with the transforming activity of the E1B protein, but its contribution to viral replication is not well understood. To address this issue, we used microarray hybridization methods to examine cellular gene expression in normal human fibroblasts (HFFs) infected by Ad5, the E1B 55-kDa-protein-null mutant Hr6, or a mutant carrying substitutions that impair repression of p53-dependent transcription. Comparison of the changes in cellular gene expression observed in these and our previous experiments (D. L. Miller et al., Genome Biol. 8:R58, 2007) by significance analysis of microarrays indicated excellent reproducibility. Furthermore, we again observed that Ad5 infection led to efficient reversal of the p53-dependent transcriptional program. As this same response was also induced in cells infected by the two mutants, we conclude that the E1B 55-kDa protein is not necessary to block activation of p53 in Ad5-infected cells. However, groups of cellular genes that were altered in expression specifically in the absence of the E1B protein were identified by consensus k-means clustering of the hybridization data. Statistical analysis of the enrichment of genes associated with specific functions in these clusters established that the E1B 55-kDa protein is necessary for repression of genes encoding proteins that mediate antiviral and immune defenses.

Indexed as

Gene Expression RegulationTranscription, GeneticAdenovirus E1B ProteinsAdenoviruses, HumanCell LineCells, CulturedFibroblastsGene Expression ProfilingHumansTumor Suppressor Protein p53Adenovirus E1B ProteinsTumor Suppressor Protein p53

Identifiers

PMID19211769
PMCPMC2663238
OpenAlexW2007734596

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.