Evidence map›Paper›PMID 19211743›Full record

ArticleJournal of virology2009

Impact of epitope escape on PD-1 expression and CD8 T-cell exhaustion during chronic infection.

Joseph N Blattman, E John Wherry, Sang-Jun Ha, Robbert G van der Most, Rafi Ahmed

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 138 citations in OpenAlex.

  1. Article
  2. Article
  3. Efficacy of Immune Checkpoint Inhibitors and Oncoviruses in Solid Tumors.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Review
  4. T cell exhaustion in parasitic infections.Frontiers in immunology · 2026
    Review
  5. Article
  6. Review
  7. Article
  8. CD8Immunity · 2023
    Review
  9. bioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. Anti-coronavirus vaccines will not accelerate the transition of humanity to a non-pandemic period, but the pandemic will take fewer victims.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2022
    Review
  12. Article
  13. In vivo CD8Cell · 2021
    Article
  14. Brd4 Regulates the Homeostasis of CD8Frontiers in immunology · 2021
    Article
  15. Article
  16. iCaFrontiers in immunology · 2020
    Article
  17. Review
  18. A dynamical motif comprising the interactions between antigens and CD8 T cells may underlie the outcomes of viral infections.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  19. CD8Seminars in immunopathology · 2019
    Review
  20. Review

36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Joseph N BlattmanDepartment of Microbiology and Immunology, Emory Vaccine Center, Emory University School of Medicine, Atlanta, Georgia 30322, USA.
E John Wherry
Sang-Jun Ha
Robbert G van der Most
Rafi Ahmed
Emory University · US

Funding

Transgenic/KnockoutP01AI056299 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI SHARPE, ARLENE H. · 2003 to 2023
$42.5M
T CELL MEMORY TO VIRUSESR01AI030048 · NIAID · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI AHMED, RAFI · 1990 to 2022
$5.2M
T CELL MEMORY TO VIRUSESR37AI030048 · NIAID · EMORY UNIVERSITY · PI AHMED, RAFI · 2001 to 2010
$3.9M
Regulation of exhaustion and altered CD8 T cell memory during chronic InfectionR01AI071309 · NIAID · WISTAR INSTITUTE · PI WHERRY, E. JOHN · 2006 to 2010
$1.8M
NIAID NIH HHS AI071309NIAID NIH HHS AI30048NIAID NIH HHS AI56299NIAID NIH HHS N01 AI030048NIAID NIH HHS P01 AI056299NIAID NIH HHS R01 AI071309
6 · The paper itself

Abstract

During some persistent viral infections, virus-specific T-cell responses wane due to the antigen-specific deletion or functional inactivation (i.e., exhaustion) of responding CD8 T cells. T-cell exhaustion often correlates with high viral load and is associated with the expression of the inhibitory receptor PD-1. In other infections, functional T cells are observed despite high levels of pathogen persistence. The reasons for these different T-cell fates during chronic viral infections are not clear. Here, we tracked the fate of virus-specific CD8 T cells in lymphocytic choriomeningitis virus (LCMV)-infected mice during viral clearance, the persistence of wild-type virus, or the selection and persistence of a viral variant that abrogates the presentation of a single epitope. Viral clearance results in PD-1(lo) functional virus-specific CD8 T cells, while the persistence of wild-type LCMV results in high PD-1 levels and T-cell exhaustion. However, following the emergence of a GP35V-->A variant virus that abrogates the presentation of the GP33 epitope, GP33-specific CD8 T cells remained functional, continued to show low levels of PD-1, and reexpressed CD127, a marker of memory T-cell differentiation. In the same animals and under identical environmental conditions, CD8 T cells recognizing nonmutated viral epitopes became physically deleted or were PD-1(hi) and nonfunctional. Thus, the upregulation of PD-1 and the functional inactivation of virus-specific T cells during chronic viral infection is dependent upon continued epitope recognition. These data suggest that optimal strategies for vaccination should induce high-magnitude broadly specific T-cell responses that prevent cytotoxic T-lymphocyte escape and highlight the need to evaluate the function of vaccine-induced T cells in the context of antigens presented during virus persistence.

Indexed as

AnimalsAntigens, DifferentiationAntigens, ViralBase SequenceCD8-Positive T-LymphocytesChronic DiseaseEpitopes, T-LymphocyteFemaleGlycoproteinsInterleukin-7 Receptor alpha SubunitLymphocytic ChoriomeningitisLymphocytic choriomeningitis virusMiceMice, TransgenicPeptide FragmentsProgrammed Cell Death 1 ReceptorAntigens, DifferentiationAntigens, ViralEpitopes, T-Lymphocyteglycoprotein peptide 33-41, Lymphocytic choriomeningitis virusGlycoproteinsInterleukin-7 Receptor alpha SubunitPdcd1 protein, mousePeptide FragmentsProgrammed Cell Death 1 ReceptorReceptors, Antigen, T-CellViral Proteins

Identifiers

PMID19211743
PMCPMC2668476
OpenAlexW2160932925

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.