Evidence map›Paper›PMID 19211029›Full record

ArticleJournal of controlled release : official journal of the Controlled Release Society2009

Quantification of plasmid DNA copies in the nucleus after lipoplex and polyplex transfection.

Richard N Cohen, Marieke A E M van der Aa, Nichole Macaraeg, Ai Ping Lee, Francis C Szoka

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Journal of controlled release : official journal of the Controlled Release Society, 2009. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 197 citations in OpenAlex.

  1. Review
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  5. Article
  6. Unique DNA impacts on transient Expi293Frontiers in bioengineering and biotechnology · 2026
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  13. The strategies and advances of mRNA translation booster.Asian journal of pharmaceutical sciences · 2025
    Review
  14. Article
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  16. Article
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  18. Article
  19. Article
  20. Review

26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Richard N CohenJoint Graduate Group in Bioengineering, University of California at San Francisco, San Francisco, CA 94143-0912, USA.
Marieke A E M van der Aa
Nichole Macaraeg
Ai Ping Lee
Francis C Szoka
Graduate Theological Union · US

Funding

Rational Design of Viral-Mimetic Lipid Gene VectorsR01EB003008 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SZOKA, FRANCIS C. · 2003 to 2013
$3.2M
NIBIB NIH HHS R01 EB003008
6 · The paper itself

Abstract

Nuclear uptake of plasmid DNA is one of the many cellular barriers that limit the efficiency of non-viral gene delivery systems. We have determined the number of plasmids that reach the nucleus of a transfected cell using an internally standardized quantitative PCR (qPCR) assay. We isolated nuclei using two different protocols: a density gradient technique and a detergent-based method. The density gradient procedure yielded nuclei with substantially less adhering plasmids on the outside of the nuclei. Using the density gradient protocol we determined that cells transfected with Lipofectamine lipoplexes or polyethylenimine polyplexes contained between 75 and 50,000 plasmids/nucleus, depending on the applied plasmid dose. Any increase above 3000 plasmids/nucleus resulted in only marginal increases in transgene expression. Furthermore, lipoplex-delivered plasmids were more efficiently expressed, on the basis of protein expression per plasmid number in the nucleus, than polyplex-delivered plasmids. This indicates that polymer may remain bound to some plasmids in the nucleus. Lastly, by sorting transfected cells into high- and low-expressing sub-populations, we observe that a sub-population of cells contain 3x greater plasmids/nucleus but express nearly 100x more transgene than other cells within a single transfection reaction. Taken together these results suggest the importance of considering the processes downstream from nuclear entry for strategies to improve the efficiency of gene transfer reagents.

Indexed as

Gene Transfer TechniquesTransfectionAnimalsBiological Transport, ActiveCarcinomaCell FractionationCell Line, TumorCell NucleusContrast MediaDetergentsDNAGene ExpressionGenetic TherapyGenetic VectorsHumansLuciferasesContrast MediaDetergentsDNAiodixanolLuciferasesPolyethyleneimineTriiodobenzoic Acids

Identifiers

PMID19211029
PMCPMC2765102
OpenAlexW2007831086

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.